G197391


Basic Information

Item Value
gene id G197391
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5289001 ~ 5326198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224093
CTCTCTAGAAGTGGTGATTGGCCGGTTCCAGGAAAAGTTAAAATTGGAATATGGCAAACTTTCGGTTTCTAAATTGCAAACCACTACTTGTTGACTGAAGAAAATAATAGACAAGATTGAAACGCTGATAATCAACTGCAGAATATTTGGACAGCAGATGGCGCTGTAGATGTCAGATAAGAAAGGTTTGTTTTACTGTTTGCTTGAACTGAACTGCCCTTTATCAATTTGAATGGATTATAATGACATAAAGCTGCTCATTTAATCTCCTGTGTCCTTCTGCTTTATATATGGTCACTTCTTCAGTCAGTGTCTTGTTTCTTTCTACTTGATCTCAACCCCCCCTCATCTGAACCACATGAGTCATGCTGTGGGAAATTCCCAGCCCCGGGTTGCTCACAATGTTCTCTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTCTGTCCTTCTTTCTGTCTCTCCAACACAGTGATTCGGTGTACAGTACCCTCTGTCATTATGTGCTGGCATGGTGCTTGTGCAACTGGGACTGCATTTTTCGCTGACTAGGCATGTAGATAATATCGCAGGCAGCTCTCGTCTCTGTCTCTGTCTTGTTCCTCTGGTTCGCTCTGTATTTCAGAGGTTTGCATGCCGGATGCCTCTCCTCCTCTCCATGTTGTCCTCTCTGCTCCAGTTACACTTTATTGTAGGGTAAATTCTCTAAAATCAGATTCTCAAGTGTATCTTTCTATTATATTACTTAATATCGCTCTCTTCGCTTTTCTCTCTTTTTTTTTTTTTTTCTTTTTTTTTTGGTTATATACATGAAAATCAAGCTATATAAAACACCTGCAGTCCTGTCTTTAAAAGCAGGTCATCGGTTTAATAAAAACCACCATTTTGTATTGAAATGACCACTTTTCCATGTGTTGACATTAGTGTCAGGGCTCAACAATAAGGATGGCACAGTGTGAGAGTATCCCAGTTGAGCCAGCCATATTGGAAATTTTAAACACATTAAATTATACAGATTTATTTATTTTTTTACTTTATTTTGTTCTATGGTAAAGAAAATGTTCAAATATTTATTGAATGCTATTACACTTGCTAAAAACTTTGGGGGAAAAAATCCTTATTGTTGAGTGTGATACTGGACATGGTGAATTGAATGTCAAAAGTGTGTGTATATATATATAAATATCGTTACTATGTTAATAGCTTTTATTACTGTAAGTATGACTTTGAGTCATGTATTCATGTCCAATAATTTTTTAACAAGCTGTAGAAGTATGTTTTCATGTGTCTAGGGGCAGATTTTTTTTTTTTTTCATCAAGATGTCTCTTGGTCAGATCTATTCAGTATTGTTTGGAGCAGCCACCTTCCCAGAGTGCGGGTCAGAAGGACACGAGAGAGAGCAGGAGAGGTGGCCTGGCTGCCTGCCTGAACCAAATGATTCCTGCTCCTGCACTATTGTCTATGGAGGGGTGTGGAGAGCAGAACTGCCACACGCAGTGTTCGTGAAGAGCAGAGACGTTACACACCTCAGGAAGCAATGGCTATCACTGTCAATTAATTTTTTTTACACTCAGAGCATAGTATACAGTGCATAATATTTCCTCAGTCACACAAACACACAGCAACATCTGAGCTTTGGTTTATTTGCCCCCTGTTTTCCTGTTCTAGATCTAATGTGTCAGGGCTATTTCCACCAAACACCAGTGGTGTATTTATATCAAAGAACTCCTAGCAGCTGGTCTGGGTAGACAGTGACAGCCATCGCTGCATGTATGTGTGTGCGTCTTGTGTTCGAGCGCTGTGTTTGTCATGCTCTTGTTTCCCATGCCTCTCCTCTGCCAATCATTGTGTGTGATCTGTAGGCAGCTAGAGGTTTGTGGTATTCGGGATCTTCTCTTATTTTCCCATATGCTTTTATCTACTTATTCCCTCTTCTTTCTTGCTCTCTTAACATCTTTGTTTGTCTGTTTGCATGTTAAGTCAATAGCATTAGTTTCTCTTTCACACACACTCCCCTTCATCCTACAATGTACCCTAATTCTCATCTTCCTTTTCTTGCCCCCCAACCCAAGGAGATGTGCACTGGGCAGTAATCAAGTCAAATGACAGACATCACGTAAATCACACACATAATGGATTTGATTATCGCTACTCCTGGTGTGTAACTGACTTCCCTAGAGGCTTTAATTTGAATAATGTAGAACACTCAGAATGCATCATGTCTGGCAATACAATTGTCAGTCCTATATTTTGCACTGCTAAATATGGTTATTTTCACACAATTTGGTCTTTTACGAGAGTCACAAAAGCATTTATGAACAACATCACTCCCTTAAATGTTCAGGGCAACCACATCTTGAGAGTAGACTCAGTAAACCTGTGCTGTGTGAACGCAACCACACGGGAAACATAGCTGTCTGTCACGTCATACAGTCAGTGTCTTGAGTGTGTTTTCTTTTGGGGTTCTGGTAACTCACAGAGATGGTTATATGAGCTGTTTGATATCTGAAGGTTTTAGATCCAGTCACCGTTCCACCGGCACTGCTCCCATCAGTTTTGTGATCTGGGTAAGACCCAAGCATTGCCTTCTACACTTGAATATAAATTAAAAAAAAAAAAGCTTCCAAAGCTGCTATCCATTAAACAAGATTGAAGGGAGAAATGTGCACCTTGATTGGACACATTTATTATACATAAGACTTTCCAGTGTTCTGCAGGTCCCCATTTTAATTACCTTCAGTCACTATAAAAAAAAAAAGCTTGGCTTTGGTTATTTATTCATACCAACAGTATGAATAAATGATTGTAAATCCCAAATGCTGACTGTGTAAACATAGCCCATGAGTGACTATGAGATACAGTAAGTATAATACATAATATCTCTCTCACTGGTACAACAATTTACAACCTAATAGACTTGAAAAATTGGCACATGCATTCTTCAAAACTTTCAGTTCATACAGTTTAAGTTTGCAACCACATGCACACACATTCTCTTAATGAAGGTCTTGATGATCTTCTGTGTGAAATTTAAACCGAGGAGTGTTATGATAGAAAGGTCAAGGTTTGCCATTTCAAAAGAGCCCTGATCTGTAGTTGCGACCCTATAGCCGAGGTATCTTTTCCATCATCTGTGTTCAGTCTTCCTCTTTGTTTCTTTTTTTTTTTTATATAAAATGAACAATGAAGACCAGGACTTTCCAGGAACTCAGTGGCACCAAAAAGTGTTTGAACACTTTAGCTATACTTAATATTATAGCATTACAGAACCAAATATCAAACAAAGTGGAATGAATTAAGAAACATAGTTAAATTTTTAAGCAAAAGCAGTAAGGAAGAGAATGTTAGATTTTCTCTCTCTCTCTTCCATAAGCACACTGACGCAACAACAGCTGTCAAGGTCCCCTAACAAACATACACCCTCCCCTAAAAAACTTTGGCTGGCCCGTTACCCCATCTTAACTTGATAACACTGTCCTGCTCTGATCTCTCTCGCTCTTGTTGGTCATCTATCTGTTTAAAGCATTTTGGCAACCAGCTACAGAGCATGAAGGTCAGCAAGAACACTGTCACCTCATAAATGGTTTCATCATCAACCACCACCTACTGACTCTTAAGGCCGTGACACACCAAGCCAATGTCAAAGAACTACCGGTAAGCCGGCAACAAAAGCCATCTGTTGTTGCCACTACGTCTGAGCCATAAAGCTGCGCTTGAGCACATCAAAAGGACTACAGGTGACTGCCAACTAGCACATGAGCTCTGCATCTGCGTGGAAGGAAATAACTGTCTATATCAGCAGGTATCAATAGTCCTATATTCGTCATTCAAAAAGGGAAACCAAACTTAGGACTGCAGATATACAAACCGTATATCAAAGCAGCGCTTTCTTACCATTTTGAATATCAATCATGCTGTTCACTTTTTTCATTCTAGCAAGCTCATTTTATGAAAATATTGGCGTATTGGAATGTTCAGGTAAGATGATGTAAAATTAAAACAGCCTTCTGTCTGTGCCGTCTTGACTTCTTTGCTCGTTTTCATCACTTTTGCTTTTATTCTCATGCACTGATTCGTTCGCTAAACTGAACTGCCATTCAAAGTGATCTTTCTCACTGACGGCATTTCAACATGCTGAATCAGGTGAGAGCCGATGAGTAGAACACACTGCGAAAACCAGATGCGTGCCGGTGGCCGACTCTCGGCTTGGTGTGTCACAGCCTTTATAGTTCTTTGATTTGACATTTCCATTGGTCTCTGAGACCATCAATTCCTAGTCACTTTAAGATATTTTTTATTTCCAGTGTATCAGCATAATTGTCCTTTCTGTTTTCATATTTTCATTTCACACATTTCATGGACAGAAAGAAAAGAAATAGAGGTGTGTTTATTTACATTTTATTTACAAGGTGACATGTTTTTATATCAGCGGTACTGTGAATTTTCCATGCTTCAGTATTGATATACACAATATAAAATGTCAAATTTAGTGTGATCTCATTCTCAATTCTTAATGAAGCGGTCACAAATCGCAAATAAAGCACACTGTAAAACCACTCGCTGCCCTGCACATCTCTCTCCTGTTTTATTTTAATCCCACCTTCCACTCCCTCTCTCACTTCCTGCTTTTACTTTGTTGATAACATCACTCTCCATCACTCTTTACTTGTGGGAGTGTATATGTTTGGACAATATAACATTTTTTTTTTTTTTTTTTTTTTTAATCATTTATATGAATTAACTGCCAGTTAGTGGATGTGTAGATGTGTGAATTCACTGTGGTAATGTAGTGGATCAAAGAGACAGTGTGACCAGTAGAAAGCTGTAGAGATTGGCCAGTTTCTTCAGTTTGTGTGACGTTTGACTGTTCTTTTGACAGCCCAGGGTTTAAAAGCCAGGTTCGTATGGACATGTTTTCACTCCACTTGCACTGCTGTTGGATTCTTCGGCGTTTTTGCTCTTCATCTGTCTGTTTAATTTTAGTGCATTCATCCATTTGCCCCCACAAAACCCATCCGCCTCCCACGTCTGCCTGACACGCCATCCACAGGGCCAGTGGATCTGGGCCACATTTGCCTGATTCTGATTGGAACAATTAAACTAAACAAAGACAGCTTTTTTCCCCAAGTTCTGTTCTCTTGATCTAATGGTCTCCTGTTTGGCAAAGAGAAGTTCATGTTTGCTGTGTAAAGTGCTCCACTCAGCAGGAAGAGGTAATGTGAGGTCAGCTCAGTGCGCACCCTGTTTAGATGCTCCTCGAGTCTTCAGAAGGATGAAATGCTGTGTGTTGTTAGCAGAGGATGCTGCAGAGCCACTGCATTGCAGGCCTTTTGGGTTGGGCTTACTGCAGGCGCATCTGCACTGCCGATAAATGAAAGATCCTGGGACTTGCGCTCTTGATCCTGCGGTCTGTCTTCACATCTGTACACAATGAGCTTGTGTCTTATGATTAATTATATATCATCATTTCTTTAGAGGTAAATGCAAGCTGCAATTGGCCTTTTGCTGGTTTTGATGTGCGTTCTGTGGCCTCCTCTGCTGACTATAAATACAGAAAAGGAAATGATCGTTATCCCACGGTCTTGTTCCTTTTTTTTCGTCCCTGTAATTTGAACAGAAGAACATGCACATAGCTGTTTGGATGTTCAGAGGCCCAAAGGGGATTTTGTACAAGATGAGCATTAGTGCAGCTCCCCATGCGCAAACCATCTGGAGAAAACGTTTCCATATTCTATCACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCTCTCACTCCAAGCTAAGATATAAACGAACTGAAGATTTAACACGATTATTTTGTATAACATATATATAAAAAGAGAGATCAACCAATATTCATTTTGTATGGCCGATATGATACCGATTGTTTTTGTATGGGTATGATAACCAATAAGAAGAGGAGAACTGATTTTTAATTATTTTTAGCTCTGCTTTTTGATACAAATTATAAAATTTTGAATAACAACAATAGTATTACTATAGTTTTTTTAAGATATACATTACCATTCAAAAGTCTGGGGTCAATTTTTTTTTTCCCCCTTCATTTAGATTTAAAGACTTAAATTGTTGCAAAAAAAAAAAAAATCAATTTAAAATAATTCTTCTGAACTTTCTATTTATCAAAGAATCCATGAACATCAGCACAAATATTTTTTAAATAAGAAATTTATATTATTATTAAATCATATTGTGATGCTTCAAATCACAGGAAGAAATAATTGTAATGATATTTCACAATATTATTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCAGTGGTGAGTATGAGAGACTTTCAAAAAAAATCTTACCAACCCCAATCTTTTGAACATTAGTGTATATGCAAACGCAAATTCACAAAATGAATTCATTCAAACATATCAGTTTCTTTTCCTTTGAACACTGTTGTTTTCTGTTTAACATACTGATGTTTAATACCATTGTTGGGCACTATTCTTTAGAAACCCATAGAGAAAGCAGAAAAGTGTGAATTGCCATAGGTTTTCTAATCAACCCAACACTTAAGTGAGTTAGGGACGTCTCAGGAGGTCTGTTGCAATAACCCCATTAAATAAATGGAAAAATATGATCAAATCCCAGTAGCAGTCTTAACACCAAAGTAAGGAAAAGAAATGGAGTAGCTATTTGAAGCACTATTAAAAACAAGCCTCATGGATCTCTAATAACAGACTAAGACTAATGGCTTTATATTTATAAAATGTATGTTTAGGGCTGTCAGTTCAGAATCCAAATTGGTCAAACCATTGCGTGGGCGTGGTAAACAATCGGCAGAGCTAATGGAAAGCGGGTGTGTCTTGTGGGGGTAACCTCTCCCTCCCTACCTACCCATAATGCTCTAACCTTGTTCTTGCTCCACTCCTTGCCTCTCACACACCACTCATGGCTGCTCCATCTTATGCTCATGCTCTGTAGGTTGTGACATCTGTTTAGATGACCTTGTGCATAACCACTGTAACATGCTTGCCCTCATCTCTAACAACATCTTGAGCTCTCTGCTGCCCTCTCCTTCCCTGTATATGCTTAAGTTACTATTATACAGATACGACTAACACCGCCGTCTCTTTTTGTTAAAAATGGTTTAACAAAAAGCTGCATGCTGGTTAATGGTTTTGGTTTTCACCTCTATTTATTTTTTTTATTTTTTTTATTTTTTTTTGCTGTTGTTCATATTGGCCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224093 True 7315 lncRNA 0.39 2 5289001 5326198

Neighbor

gene id symbol gene type direction distance location
CI01000046_05279865_05281709 BAXA, BAX coding upstream 6874 5279865 ~ 5282127 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 408332 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 435825 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 469633 4811610 ~ 4819368 (+)
CI01000046_04806234_04808207 NA coding upstream 480666 4805355 ~ 4808335 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 9688 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 65785 5391983 ~ 5402075 (+)
CI01000046_05481838_05537970 NA coding downstream 155640 5481838 ~ 5538151 (+)
CI01000046_05562155_05568637 MLX coding downstream 235759 5561957 ~ 5569463 (+)
CI01000046_05635252_05642052 DLX4A coding downstream 307573 5633771 ~ 5642292 (+)
G197352 NA non-coding upstream 12548 5259318 ~ 5276453 (+)
G197393 NA non-coding upstream 32219 5249761 ~ 5256782 (+)
G197457 NA non-coding upstream 40419 5248350 ~ 5248582 (+)
G197456 NA non-coding upstream 41237 5247299 ~ 5247764 (+)
G197455 NA non-coding upstream 41748 5247045 ~ 5247253 (+)
G197383 NA non-coding downstream 54923 5381121 ~ 5384299 (+)
G197399 NA non-coding downstream 60272 5386470 ~ 5386716 (+)
G197466 NA non-coding downstream 64924 5391122 ~ 5391352 (+)
G197386 NA non-coding downstream 105257 5431455 ~ 5769358 (+)
G197410 NA non-coding downstream 260983 5587181 ~ 5625506 (+)
G196869 NA other upstream 867314 4415530 ~ 4421687 (+)
G197121 NA other upstream 917571 4371011 ~ 4371430 (+)
G197055 NA other upstream 1139221 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1343501 3943794 ~ 3945500 (+)
G197528 NA other downstream 399923 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1493740 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110486290 LOC106601128 misc NC_048577.1 CM023231.2 38327857 ~ 38365149 (-)
tiger barb (Puntius tetrazona) G20168 NA non-coding NC_056701.1 CM032070.1 14626792 ~ 14629316 (+)