G20168


Basic Information

Item Value
gene id G20168
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14626792 ~ 14629316 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30018
agaaaaatacctATTTATAccatctatacacacacacacacaccacaaataAAAGGCCATtatgaacaaaaagaaaataggtGAAAACAAAAAACCATTAACCAGCATGCAGCTTTTTGTTAAACCacttttaacaaaaagaaaCGGCGGTGTTAGTCATGTCTGTATAGTAGTAAGCATATACAGGGAGGAAGAGGGCAGCAGAGAGCTCAGGATGTTGTTAGAGATGAGGACGAGCATACAGCGGTGATGCACAAGGTCATCTAAACAGATGTCACAACCTACAGAGGGTGAGCATAAGATGGAGCAGCCATGAGTGTTGTGTGAGAGGCGAGGAGTGGAGCAAGAACTAGGTTAGAGCATTATGGGTAGGGAGGGAGTGATCACCCCCACAAAACACACCCACTTTCCATTATTGCTGCCGATTGTTTGCCACACCCTTCAACAGTTTGGCCAATTTggatattgattaaaaaaataaataaataaataaaataaaaaaaataaaagggaacAATAACACTTGCTTTAAGCAGTGCTTCAATTAGCTACTCCATTTCTTTTCCTTGCTTTGGTGTTAAGATTGCTACTGGGatttgatcatatttttccatttgtttAATGGGGTTATTGCAAGAGGCCTCCTGAGAAGTCATTTCTCGCTTAAGGGTTGGGTTGcaattacattaaattgaaatgagAAAACCTGGGGAAAATTTGAGAAGACCATTTCCTCAGTTCACCTTACCTTAAACAAAAGGATATGAAAATTAGCTGTTACATAAACCAATAATCAAGCACACCATTGTAAAAGGTCTATTACACTACTGTAAGTTAAACCAGAACTTCATGCAGGTACCACTTTCTTCTGAGCACTGctttttgcataattatacTTTGTGAACGTATTAGgatatacattaacatttaaatgtttggggcCAATAatctaaatgttattaaaagtgtcttatgctcactaaattgatcaaaaatacaaaagaactgCATTGAGTGATTATAGAAATACCATGTTTTCTTTAACAcaccttctgatgttcattcatggCTAATTTGTGCAGCAACTAACAGTTGATCAAAAGAGTTGATCAAAGAGATAATTATGAATTTCACAATAAAACCGTTCACGCATCAACTGAAAACATCATAAATCAATTTTGAGGATTTAAAAATTTTGACCAGctcattaaaatgagaaattattaCTTTCAACCTTGTCCTAGTTGTATTGCATTAAAGGTTTGAGGCAACAGTAATACAAGTTCaatagaacagcatttactttgCTATAATtcctaaacttttaaatagtaatagttTCAAATAGTAACTTTTAAATAGTAGCGCATTTGAAAACCACTAGCATTAgtgttatgtttaaaaaaaaaaaaatcagaagtTAGTTCTACCAAAACATCTGTTCTGCATGTTTGCTCTTATCATATCCAacaaattttttattcatttatttttttaaatatcagtatcTGTAATCAGTAAATGTTGGTCAATCTCTcctacatatttttaaaataacctatAGCGAATCTTCAGTTCATTGCATACATACGTGTGTGGTGAAGGAACGTGAAAATGTTTTCTCCAGATGGTTAGAGCTTGGGGAGCTGCACTAATGCGCATCTTGTGCAAAATCCCCTTTGGGCCTCTGGACATCCAAACACTTCTGTGCATGTTCTTGCGTTCAAATTACAGGGATGAAAAAAGGAACAAGACCGTGGGATAACGATCATTTCCGTTTCTGTATTTATAGTCAGCAGAGGAGGCAACAGAGCGTACATCAAAACCAGCATAAGGCCAACTGCAGTGAGGGACTGTATTAAAACGgtctattaaaaacaacaacaaaaaaaacgaacCCAAAAGATAGAACagaattaaacagaaaacacatgaCTGTGCACAGACGAGACGACAGACCACGGCATCAAAAGAGCGAAAGTCCCAGGATCTTTGGTTTATCAGCAGTGCAGATGCGCCTGCAGTAAGCCCAGCCCAAAAGGCCTGCAATGCAGTGGCTCTGCAGCATCCTCTGCTAACAACACACAGCATTTCATCATACTGAGGACTGGTGGAGCATCTAAACAGAGTGTGCGTTGAGCTGACCTCACATTACCTCTTCCTGCTGAGTGGAGCACTTTACATAGTAATGGTGAACTCCTCTTTCTCAAACAGGAGACCATTAGATCAAGAGAAACGGGACTTGATGAAGAGAGCTGTCTTTGTTTAGTTTAATCCCTCAtattagccaatcagaatcattCAAATGTGGCCCAGGGCCAATCACCGGGCCCGTGAATGGAGTGTCAGGCAGACGTGGGAGGCGGGTGGGTTTTGTGGGGACAAATGGAtgaatgcactaaaataaaacagacagatgAAGAGCAACAACGCCGAAGAATCCAACAGCAGTGCAAGTGGAGTGAAAACATGTCCATACGAACCTGGCTTTTAAACCCTG

Function

GO:

id name namespace
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30018 True 2500 lncRNA 0.38 2 14626792 14629316

Neighbor

gene id symbol gene type direction distance location
gosr2 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 18068 14603174 ~ 14608724 (+)
wnt9b wnt9b,LOC107721476,LOC107601233,LOC107720014,LOC107590369,LOC107674619,LOC107654519 coding upstream 34210 14584130 ~ 14592582 (+)
fmnl1a LOC107721528,LOC107601298,LOC107654518,LOC107688135,LOC107720013 coding upstream 171549 14440829 ~ 14455243 (+)
LOC122341307 NA coding upstream 193200 14420262 ~ 14433592 (+)
LOC122341695 LOC107688129,LOC107720008,LOC107601293,LOC107654513 coding upstream 224898 14397150 ~ 14401894 (+)
map3k14a LOC107654524,LOC107721479,LOC107601304,LOC107674595,LOC107590367 coding downstream 13649 14642965 ~ 14657476 (+)
rps11 rps11,LOC107674708,LOC107590366 coding downstream 40165 14669481 ~ 14671559 (+)
LOC122342191 NA coding downstream 41280 14670596 ~ 14670680 (+)
hrob LOC107721529,LOC107654526,LOC107601306,LOC107720097 coding downstream 43001 14672317 ~ 14678865 (+)
asic2 asic2,LOC107654528,LOC107674665,LOC107720021,LOC108411330,LOC107592342 coding downstream 55330 14684646 ~ 14957726 (+)
G20166 NA non-coding upstream 7958 14617262 ~ 14618834 (+)
G20146 NA non-coding upstream 168886 14379624 ~ 14457906 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding upstream 321899 14303150 ~ 14304893 (+)
G20057 NA non-coding upstream 475834 14148464 ~ 14150958 (+)
G20009 NA non-coding upstream 524888 14100173 ~ 14101904 (+)
LOC122338121 NA non-coding downstream 35526 14664842 ~ 14667052 (+)
LOC122342199 NA non-coding downstream 36170 14665486 ~ 14665570 (+)
LOC122342189 NA non-coding downstream 36522 14665838 ~ 14665922 (+)
LOC122342192 NA non-coding downstream 37130 14666446 ~ 14666529 (+)
G20180 NA non-coding downstream 290929 14920245 ~ 14969285 (+)
G20167 NA other upstream 3934 14618994 ~ 14622858 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other upstream 11384 14535179 ~ 14615408 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other upstream 353483 14255490 ~ 14273309 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other upstream 503664 14120185 ~ 14123128 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other upstream 507222 14118467 ~ 14119570 (+)
G20172 rps11,LOC107674708 other downstream 35603 14664919 ~ 14671568 (+)
G20286 LOC107581737,LOC107654534 other downstream 519796 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other downstream 539022 15168338 ~ 15169258 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other downstream 640484 15269800 ~ 15280113 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 1077620 15706936 ~ 15744194 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G197391 NA non-coding CI01000046 null 5289001 ~ 5326198 (+)