G20172 (rps11,LOC107674708)


Basic Information

Item Value
gene id G20172
gene name rps11,LOC107674708
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14664919 ~ 14671568 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30025
TCCTCTTTACGACTCGGCTGGCGAAGATGGCGGACACACAGGTGTTGACCAAGATGAAGATGCAGAGGGCCATCGTCAGATCAGATTACATCTGCAAGTACAACCGCTATGAGACGAAGACTTGTCTGTCCACCTCTCTCCGTGCTTTAGGCTATTGCTGGCACTTACATTGATAAGAAATGCCCCTTCACCGGAAACGTGTCCATCAGAGGCCGTATTCTGTCTGGTGTGGTGACCAAGATGAAGATGCAGAGGACCATCGTCATCAGACGGGACTACTTGCATTACATCCGCAAGTACAACCGTTTTGAGAAGAGACATAAGAACTTGTCTGTCCACCTCTCCCCATGCTTCAGGGACGTGACCGTTGGTGACATCGTTACAGTTGGAGAATGCCGACCCCTCAGCAAGACAGTGAGGTTCAACGTCCTGAAGGTCACCAAGGCAGCTGGAGCCAAGAAACAGTTCCAGAAGTTCTAGATCTGTTTTAACAATATGGCACACCTGTATTGtttgtggaaaagaaaaataaaaaaagttctttaaatgtttctcTTACA

Function

symbol description
rps11 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11).

NR:

description
PREDICTED: 40S ribosomal protein S11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30025 True 560 TUCP 0.47 5 14664919 14671568

Neighbor

gene id symbol gene type direction distance location
map3k14a LOC107654524,LOC107721479,LOC107601304,LOC107674595,LOC107590367 coding upstream 7443 14642965 ~ 14657476 (+)
gosr2 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 56195 14603174 ~ 14608724 (+)
wnt9b wnt9b,LOC107721476,LOC107601233,LOC107720014,LOC107590369,LOC107674619,LOC107654519 coding upstream 72337 14584130 ~ 14592582 (+)
fmnl1a LOC107721528,LOC107601298,LOC107654518,LOC107688135,LOC107720013 coding upstream 209676 14440829 ~ 14455243 (+)
LOC122341307 NA coding upstream 231327 14420262 ~ 14433592 (+)
hrob LOC107721529,LOC107654526,LOC107601306,LOC107720097 coding downstream 749 14672317 ~ 14678865 (+)
asic2 asic2,LOC107654528,LOC107674665,LOC107720021,LOC108411330,LOC107592342 coding downstream 13078 14684646 ~ 14957726 (+)
kcnj19a si:dkey-106c17.3,LOC107654469,LOC107581800,LOC107737881,LOC107674737,LOC107720030,LOC108432058 coding downstream 358255 15029823 ~ 15050437 (+)
tmem98 tmem98,LOC107674611,LOC107720031,LOC107738157,LOC107654470 coding downstream 421388 15092956 ~ 15099097 (+)
zgc:100868 LOC107654462,LOC107738142,LOC107581796 coding downstream 578966 15250534 ~ 15257035 (+)
G20168 NA non-coding upstream 35603 14626792 ~ 14629316 (+)
G20166 NA non-coding upstream 46085 14617262 ~ 14618834 (+)
G20146 NA non-coding upstream 207013 14379624 ~ 14457906 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding upstream 360026 14303150 ~ 14304893 (+)
G20057 NA non-coding upstream 513961 14148464 ~ 14150958 (+)
G20180 NA non-coding downstream 248677 14920245 ~ 14969285 (+)
G20183 NA non-coding downstream 299444 14971012 ~ 14971661 (+)
G20179 NA non-coding downstream 300731 14972299 ~ 14989992 (+)
G20188 NA non-coding downstream 318661 14990229 ~ 14993037 (+)
G20269 NA non-coding downstream 458113 15129681 ~ 15138900 (+)
G20167 NA other upstream 42061 14618994 ~ 14622858 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other upstream 49511 14535179 ~ 14615408 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other upstream 391610 14255490 ~ 14273309 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other upstream 541791 14120185 ~ 14123128 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other upstream 545349 14118467 ~ 14119570 (+)
G20286 LOC107581737,LOC107654534 other downstream 477544 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other downstream 496770 15168338 ~ 15169258 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other downstream 598232 15269800 ~ 15280113 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 1035368 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 1508052 16179620 ~ 16207846 (+)

Expression


Co-expression Network