smim22 (si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279)


Basic Information

Item Value
gene id smim22
gene name si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14120185 ~ 14123128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU29725
ACTTCCGCAAATCTCTCAGCGGTTGAACGAGACCTGATCAAAAGCGCCACAGAAACAGGTGTACGCGGTAACCCGGAAACACCACCAACGAAAACAACAGGAGTCGTCTCGCTGAAGTCATGGACAAGAGCATTCAGCAGGATTTTGAGAACCAGTTCAACGATGTGGTTTCGAGGCTACAGTCGAAGCAGATGTTTCAGTCGGACTGGGACATTGCCTCGTTTGCCGTTTTCTTTATCTTCATAGGCATGGTGCTGTTGCTGGTCATCTTGGTTCTGatccgctgctgctgctgctgctgctgcgatGAGAAGCCAAGAAGACAGAAGGTGGGAGCCGATAATATGGCAATGGAGCCATGATCTTCCTGAAACACAGGCACCATTACAACTGGGTTTCTTTCTCCAACAGTTATGCCACCTTTTCATTATTTACGTGTGAACAAGTAATCGAGGGAGAACTATATTTTAGCTAGACGCTTCCTTATAGGGatgataaaagacatttttcctactgtgtaaaaatgctgttaatatTTAGCCAGGAAATCACATGATTTGAATGTCATTGTCAGttgtatttatagatttttacatAGAAGCACGCTCACCAGTTTTGAAGACATTGGTTGCTTGAACCCTTTAAGCACTTTATAACAATCATCCTGGATGGGACTAGCGCAGGACTTTTACAAACAGCCtctattaaaattcattttagttgTTATTTGAACAGTAAGTATAACCTGTTAATCTGTAGCCTGGCTGTTAAAACTGTTGCACTTAACCTATAATCTTTACTTCAACCAGCGGCCTTGTCCaagttttaagtgtttttaatgaatttttaatctGAAATGTGCATATGATACAGAACttacaagagagagagagagagagagaaaaaaaagaagttttaaTGCTAATAAGAGAAATACTTGTGAAAACTATACCTTggaaaaatgtcaatatttgttttatttttagaaatgtaccacatttgtataaatattagaCTTTgtaagcaaataaaatacatacctttaaatgaaatgc
>TU29726
CCCAGTGTCACATACGTTTAAATTCTGTTTGTGTACCATACCCTTCCCGAGTTTCCtgaatctgaataaaaaaacaccgGAAAcgttacaaattatttaaaattattataaagagCATGAATGGAATACTGCATGTTACGTCTGTCAGCTGCTTTAATATCGAGTAGTGTATGGTGTATTCTCTGTGGTTAATATTTAGCACATAAAGAACACTTTATGACTAGATTCCTGTAGTTTTGTGCAATCGTCGCACTTCCGCAAATCTCTCAGCGGTTGAACGAGACCTGATCAAAAGCGCCACAGAAACAGGTGTACGCGGTAACCCGGAAACACCACCAACGAAAACAACAGGAGTCGTCTCGCTGAAGTCATGGACAAGAGCATTCAGCAGGATTTTGAGAACCAGTTCAACGATGTGGTTTCGAGGCTACAGTCGAAGCAGATGTTTCAGTCGGACTGGGACATTGCCTCGTTTGCCGTTTTCTTTATCTTCATAGGCATGGTGCTGTTGCTGGTCATCTTGGTTCTGatccgctgctgctgctgctgctgctgcgatGAGAAGCCAAGAAGACAGAAGGTGGGAGCCGATAATATGGCAATGGAGCCATGATCTTCCTGAAACACAGGCACCATTACAACTGGGTTTCTTTCTCCAACAGTTATGCCACCTTTTCATTATTTACGTGTGAACAAGTAATCGAGGGAGAACTATATTTTAGCTAGACGCTTCCTTATAGGGatgataaaagacatttttcctactgtgtaaaaatgctgttaatatTTAGCCAGGAAATCACATGATTTGAATGTCATTGTCAGttgtatttatagatttttacatAGAAGCACGCTCACCAGTTTTGAAGACATTGGTTGCTTGAACCCTTTAAGCACTTTATAACAATCATCCTGGATGGGACTAGCGCAGGACTTTTACAAACAGCCtctattaaaattcattttagttgTTATTTGAACAGTAAGTATAACCTGTTAATCTGTAGCCTGGCTGTTAAAACTGTTGCACTTAACCTATAATCTTTACTTCAACCAGCGGCCTTGTCCaagttttaagtgtttttaatgaatttttaatctGAAATGTGCATATGATACAGAACttacaagagagagagagagagagagaaaaaaaagaagttttaaTGCTAATAAGAGAAATACTTGTGAAAACTATACCTTggaaaaatgtcaatatttgttttatttttagaaatgtaccacatttgtataaatattagaCTTTgtaagcaaataaaatacatacctttaaatgaaatgc
>TU29727
ACTTCCGCAAATCTCTCAGCGGTTGAACGAGACCTGATCAAAAGCGCCACAGAAACAGGTGTACGCGGTAACCCGGAAACACCACCAACGAAAACAACAGGAGTCGTCTCGCTGAAGTCATGGACAAGAGCATTCAGCAGGATTTTGAGAACCAGTTCAACGATGTGGTTTCGAGGCTACAGTCGAAGCAGATGTTTCAGTCGGACTGGGACATTGCCTCGTTTGCCGTTTTCTTTATCTTCATAGGCATGGTGCTGTTGCTGGTCATCTTGGTTCTGatccgctgctgctgctgctgctgctgcgatGAGAAGCCAAGAAGACAGAAGGTGGGAGCCGATAATATGGCAATGGAGCCATGATCTTCCTGAAACACAGGCACCATTACAACTGGGTTTCTTTCTCCAACAGTTATGCCACCTTTTCATTATTTACGTGTGAACAAGTAATCGAGGGAGAACTATATTTTAGCTAGACGCTTCCTTATAGGGatgataaaagacatttttcctactgtgtaaaaatgctgttaatatTTAGCCAGGAAATCACATGATTTGAATGTCATTGTCAGttgtatttatagatttttacatAGAAGCACGCTCACCAGTTTTGAAGACATTGGTTGCTTGAACCCTTTAAGCACTTTATAACAATCATCCTGGATGGGACTAGCGCAGGACTTTTACAAACAGCCtctattaaaattcattttagttgTTATTTGAACAGTAAGTATAACCTGTTAATCTGTAGCCTGGCTGTTAAAACTGTTGCACTTAACCTATAATCTTTACTTCAACCAGCGGCCTTGTCCaagttttaagtgtttttaatgaatttttaatctGAAATGTGCATATGATACAGAACttacaagagagagagagagagagagaaaaaaaagaagttttaaTGCTAATAAGAGAAATACTTGTGAAAACTATACCTTggaaaaatgtcaatatttgttttatttttagaaatgtaccacatttgtataaatattagaCTTTgtaagcaaataaaatacatacctttaaatgaaatgcaccTTCGCCTGTACCTTTTATTTAGACATCAGCACTGGATGAATTAATTCAGTGGAAATATTAATAGCAAAGGTAAGTTCGTAATGTTGATATTatgtttattgcacaaaatatttCGTATTAAGCATGAAATACACATGAAAATAGCTTAGGTTTTCCTTAAAACATGAATCAGTATTCAAATTAACATGCATGAAATCAATAGACAAATTAAGTgcatttgacaaaataaataaaaaaaaatgtagcaataaataaagctgacaaaataaatgaagtatCAGCACAGAGAAACCTGATCAGCATCTGAACTAATCGCTTGAtataatattcctttttttcctcactgGATGCTGAGCTCTGCTCCCTAATCAGCCGTCCTCAGGAATGTGTCGTTTTACTCTAATCTGTCATTTAGTGTTAATATAGTCATACCACAGTTGCGTCACAATGGCAAATACACTATTGGTCATTTATGCACATTCGTAAGCATATGATAATGGTCTCAATGCTTGTGCTTTTCTGCACTAAAGATAGTCCCTGGCATCAGATAATGTTCAAGTGTTACAACCCACTGCtctaaaaaggcaaaaacactGGTAAAATGAGTCTGAAGAGATCTCAACTAGAATATTTCACAGTTTCTGTGACATAAGAATGTAAGCATTACGTAATTAGTAGCATTTCCTGCCTATAGCCTAAACACATATCAGATGATGCAAGATTACTGACAGACAACACTGACAAAGACAAATACTGCATAGACAAAACAAGGCATTGCTGAATACCTTCATCTGAAGAGCCTGTcgtttcaaatgaatgaattcagtTTGTATACTACATACACAGCACACTCTATTTCTGCTGCAGAACACATACTGAACAATAAAGCACACGAAATGAATACATGGTCATATAGCGAAGTCACAAATTATATCAGGGAGCTTGTTCGTGGAATTCTTTGTTCCTAGTGCATAATAAATTCATCATGTTTATGGTCACCGACTAGAGTTTTGGTTAGATGCAGCTTAAAATGGTCTGTAGTTCCAGAAACTGGAGAAGACAGAAATc
>XM_043233927.1
TTTAGCACATAAAGAACACTTTATGACTAGATTCCTGTAGTTTTGTGCAATCGTCGCACTTCCGCAAATCTCTCAGCGGTTGAACGAGACCTGATCAAAAGCGCCACAGAAACAGGTGTACGCGGTAACCCGGAAACACCACCAACGAAAACAACAGGAGTCGTCTCGCTGAAGTCATGGACAAGAGCATTCAGCAGGATTTTGAGAACCAGTTCAACGATGTGGTTTCGAGGCTACAGTCGAAGCAGATGTTTCAGTCGGACTGGGACATTGCCTCGTTTGCCGTTTTCTTTATCTTCATAGGCATGGTGCTGTTGCTGGTCATCTTGGTTCTGatccgctgctgctgctgctgctgctgcgatGAGAAGCCAAGAAGACAGAAGGTGGGAGCCGATAATATGGCAATGGAGCCATGATCTTCCTGAAACACAGGCACCATTACAACTGGGTTTCTTTCTCCAACAGTTATGCCACCTTTTCATTATTTACGTGTGAACAAGTAATCGAGGGAGAACTATATTTTAGCTAGACGCTTCCTTATAGGGatgataaaagacatttttcctactgtgtaaaaatgctgttaatatTTAGCCAGGAAATCACATGATTTGAATGTCATTGTCAGttgtatttatagatttttacatAGAAGCACGCTCACCAGTTTTGAAGACATTGGTTGCTTGAACCCTTTAAGCACTTTATAACAATCATCCTGGATGGGACTAGCGCAGGACTTTTACAAACAGCCtctattaaaattcattttagttgTTATTTGAACAGTAAGTATAACCTGTTAATCTGTAGCCTGGCTGTTAAAACTGTTGCACTTAACCTATAATCTTTACTTCAACCAGCGGCCTTGTCCaagttttaagtgtttttaatgaatttttaatctGAAATGTGCATATGATACAGAACttacaagagagagagagagagagagaaaaaaaagaagttttaaTGCTAATAAGAGAAATACTTGTGAAAACTATACCTTggaaaaatgtcaatatttgttttatttttagaaatgtaccacatttgtataaatattagaCTTTgtaagcaaataaaatacatacctttaaatgaaa

Function

symbol description
si:ch1073-443f11.2 Predicted to be involved in regulation of cell population proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane.
smim22 Involved in several processes, including lipid droplet formation; positive regulation of cell migration; and regulation of actin cytoskeleton organization. Predicted to be located in late endosome. Predicted to be integral component of membrane.

NR:

description
small integral membrane protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29725 False 1055 lncRNA 0.39 4 14120436 14122057
TU29726 False 1306 lncRNA 0.38 4 14120185 14122057
TU29727 True 2126 lncRNA 0.37 4 14120436 14123128
XM_043233927.1 False 1109 mRNA 0.39 4 14120379 14122054

Neighbor

gene id symbol gene type direction distance location
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding upstream 8864 14102015 ~ 14111321 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding upstream 35679 14076202 ~ 14084506 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding upstream 46781 14063273 ~ 14073404 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding upstream 57731 14057644 ~ 14062454 (+)
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding upstream 84160 14029505 ~ 14036025 (+)
si:dkeyp-72e1.9 si:dkeyp-72e1.9,LOC107721498,LOC107601283,LOC107688120,LOC107654504 coding downstream 34596 14157724 ~ 14195322 (+)
pdxdc1 LOC107719998,LOC107721496,LOC107654505 coding downstream 86599 14209727 ~ 14221810 (+)
gspt1l gspt1l,LOC107721494,LOC107590378,LOC107654506,LOC108438004,LOC108246886 coding downstream 99023 14222151 ~ 14229310 (+)
nde1 nde1,LOC107654507,LOC107601288,LOC107688124 coding downstream 108763 14231891 ~ 14239115 (+)
ezh1 ezh1,LOC107590376,LOC107720007,LOC107721487,LOC107688127,LOC107654511,LOC107601290 coding downstream 189900 14313028 ~ 14327730 (+)
G20009 NA non-coding upstream 18281 14100173 ~ 14101904 (+)
G19963 NA non-coding upstream 176694 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 199916 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 301963 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 327630 13787833 ~ 13792555 (+)
G20057 NA non-coding downstream 25336 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 180022 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 256496 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 494134 14617262 ~ 14618834 (+)
G20168 NA non-coding downstream 503664 14626792 ~ 14629316 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other upstream 615 14118467 ~ 14119570 (+)
G19973 NA other upstream 67153 14049490 ~ 14053032 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other upstream 117807 13995961 ~ 14002378 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 409320 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 1005329 13112477 ~ 13114856 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 132362 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 412051 14535179 ~ 14615408 (+)
G20167 NA other downstream 495866 14618994 ~ 14622858 (+)
G20172 rps11,LOC107674708 other downstream 541791 14664919 ~ 14671568 (+)
G20286 LOC107581737,LOC107654534 other downstream 1025984 15149112 ~ 15184873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G197755 NA non-coding CI01000046 null 6673660 ~ 6675496 (+)