nde1 (nde1,LOC107654507,LOC107601288,LOC107688124)


Basic Information

Item Value
gene id nde1
gene name nde1,LOC107654507,LOC107601288,LOC107688124
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14231891 ~ 14239115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234926.1
CAAACCACGAGCTGAGAGTTTTTACACAACAGAAGGAAGAGTCCCATTGTCGGGAGTGTAACGTGCCAGAAAATAGTTCGTGTAGtgctattattttattctcagAATCGTAATCATACTATTTAGTTGAACATATCCCTCacagaaactaaataaatatttggaagGAAACAACTTTGAGCATTAGCCGGAGTAATCCTGACTGAACAGCAATGAGTGACCCTGAGCCTGCAACATTCTCTTCTGTTGAACAAGAGAGGGACTACTGGAAGGAACAGGCTGCCAAACACCAGCAAAGGGCTGAGGAGGCACAGGAGGAGCTGCAGGAGTTTCAGCAGATGAGTCGAGACTATGAGGCAGAGCTGGAGACTGAGCTGAAGCAGTGTGATGCCCGTTATCGCGAGCTTCTTACCACCAACAACAGACTCCGCATGGAACTAGAAAATTACAAGGAGAAGTACGAAATTCAGCACTCTGAGGCAGTCAGGCAGATCTCGACTCTAGAAGGAGACCTGGCAGAGACCACAGCCATCAAAGACCAACTGCACAAATATATCCGGGAGTTAGAACAAGCCAACGATGACCTGGAAAGAACTAAGAGgGCGACTATAATGTCACTTGAGGACTTTGAGCAGAGAATGAATCATGTTATAGAGAGAAATGCCTTCCTCGAGAGTGAGCTTGATGAAAAAGAGAATCTTCTAGAATCAGTACAGAGATTAAAAGATGAAGCCCGAGATTTAAGACAGGAACTGGCTGTTCAGCAGAAACAGGAGCGCAAGCCGTCAATCAGCCTTCCTAAAGATATAGAGAAGCCAGAGGCCACACCCTCCAGACCCTCGTCTGTTGTGACCTCTGCCCTCCCATCTCTCCACGCCACACCCTCCAGACCTCCTGGCTCAGGGACCGCATTCAACACCCCCTCCGCTTCCTACAGCAGAATTGAAGGTCTGACTGGAACTCCTCTCACCACATCTGCAAGAATATCTGCCCTCAATATCGTTGGAGAACTGTTGAGGAAAGTTGGGAACCTTGAATCAAAGCTGGCATCATGCAGAGAGTTACACGTCCATGAGAAAACACCTAGCCGTGCGGCGATAAGTCAGGGTACACCAAGCATTTCACGGGAAACCCCAGAAATCCCATCCAACACAAATGGCTTGTATGATAAGGGGATGGTGAAGCGGTTGGACTTTGGAACAGGACCCAAGATAATGCTGTGAATAAAGTCATATTCGCTACCAGTGCACAAGCATGTCTTTCGCTCTCATTGGGAGAACAAGTATTCCTAAACCATTAATATggaaatgctttattttcaagAGCTGAATCATATCTTATGCCCCAAGTCTTCCACTATCTGAGAAGGGGCCTGCTTTAACATTCATATCAACCCTGTTGTTGTGTCTGTGGACTGAAACTACTACCTgtaattttactattttgttGGAGATTTGCATTGTGGTTTTGCAGATGTGCTATCTCTTAAAttcactgtgtgttttttttttttgtttttgttgtgttgtttttagatATCTGGTGATTTATAgcagttttaaatgtatctgcactgtcatttttatttgctctttttggGACCATAAATTGGGAGACTGTTACAGGTCACTGGCAGATATACCCCTGCAGTCCCATTATATTTGGCACTAAACTACTGATCAATGTCCAGTGAAATGCCTATTGTGGGTCACAGGACTGAAACAAGGTAAATAGCaggttcatttttaatttagaaatacctgattttattttatttagaaactaGCATCTTAATGATATATGTTTGTTACTAACTGAATGTCATGTCTTTAgtgttttgatttgaaattCTAAGGAGGTTGGTCAGATGTTATCAACTGAAGCTGTTGTTCATATCGTTGCCTTGTAGGGGCTGACGTAAGTAACCAACAGTAGGCAAAATGTTTACGCATGATCCTTTCTGGGGCCTTTTTGTTTCTAGTAATAGCTAGTGAACTGTCAGTGCCATCTTTGTTTTCAAAGATTATATTGCAGTACTGGAGGGTAGTTGCTATCATATTATGCGCTGAACATGAATTTAATGTGCCTTAATTTTGTGGCCATAATAAGCTTTGCCTCAAAGTTAATTTGGGTATTGGGGAACTTATTAGCCCGAAGGGAGTTGCAGCTTTCCAATGTATTAATTCTCTGATGTGTCAGGGATTCCATTAACAGGAGAAATGGAATTCTGAGTGGCGTTTAATCGCTTAGTTTTCACATTTCGTTTTGAGTTGTACATTTAAGAAACAAGCAATATGAATACTTCAGTGAAGGGTAcagatatttttatgttaaaaatagttgTAAAGAAAAATTGATACATTATATTATCCATTTTTGCTTAGAGGTACTAATGAAAAATGATAGAAATGGAGTATCATGATTGATAGATTTATCACACTTGATCGCACCATCTCAGGGCCTCATGAAAGCAATAACTTCACTAAAGATGTCATTACAGTTCAAATTCTGTCAAGTATTTGTCTCTATGCACAAGTCATGCACAGTTGCCAATTATTGCCATCATGGGTTTTCTTTGTTATAAATGAACCTAAACGTCTGCAATGTCCATGCGTTCTTCAGCAAAGGCAATGCAAAGTTTATCCTGTCTGTAAAACCATTTCATTGTTGGTTAATCCATaaccttcaaaataaatgtgtagttAACAGGA

Function

symbol description
nde1 Predicted to enable microtubule binding activity. Acts upstream of or within regulation of cell projection size. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Human ortholog(s) of this gene implicated in lissencephaly 4. Orthologous to human NDE1 (nudE neurodevelopment protein 1).

NR:

description
PREDICTED: nuclear distribution protein nudE homolog 1

GO:

id name namespace
GO:0032536 regulation of cell projection size biological_process

KEGG:

id description
K16738 NDE1, NUDE; nuclear distribution protein NudE

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234926.1 True 2711 mRNA 0.41 9 14231891 14239115

Neighbor

gene id symbol gene type direction distance location
gspt1l gspt1l,LOC107721494,LOC107590378,LOC107654506,LOC108438004,LOC108246886 coding upstream 2581 14222151 ~ 14229310 (+)
pdxdc1 LOC107719998,LOC107721496,LOC107654505 coding upstream 10081 14209727 ~ 14221810 (+)
si:dkeyp-72e1.9 si:dkeyp-72e1.9,LOC107721498,LOC107601283,LOC107688120,LOC107654504 coding upstream 36569 14157724 ~ 14195322 (+)
rgs9a rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993 coding upstream 120570 14102015 ~ 14111321 (+)
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding upstream 147385 14076202 ~ 14084506 (+)
ezh1 ezh1,LOC107590376,LOC107720007,LOC107721487,LOC107688127,LOC107654511,LOC107601290 coding downstream 73913 14313028 ~ 14327730 (+)
LOC122341305 si:ch211-18i17.2,LOC107688129,LOC107720008,LOC107601293,LOC107721484,LOC107654513 coding downstream 129980 14369095 ~ 14397145 (+)
LOC122341695 LOC107688129,LOC107720008,LOC107601293,LOC107654513 coding downstream 158035 14397150 ~ 14401894 (+)
LOC122341307 NA coding downstream 181147 14420262 ~ 14433592 (+)
fmnl1a LOC107721528,LOC107601298,LOC107654518,LOC107688135,LOC107720013 coding downstream 201714 14440829 ~ 14455243 (+)
G20057 NA non-coding upstream 80933 14148464 ~ 14150958 (+)
G20009 NA non-coding upstream 129987 14100173 ~ 14101904 (+)
G19963 NA non-coding upstream 288400 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 311622 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 413669 13815353 ~ 13818222 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 64035 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 140509 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 378147 14617262 ~ 14618834 (+)
G20168 NA non-coding downstream 387677 14626792 ~ 14629316 (+)
LOC122338121 NA non-coding downstream 425727 14664842 ~ 14667052 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other upstream 108763 14120185 ~ 14123128 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other upstream 112321 14118467 ~ 14119570 (+)
G19973 NA other upstream 178859 14049490 ~ 14053032 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other upstream 229513 13995961 ~ 14002378 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 521026 13698537 ~ 13710865 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 16375 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 296064 14535179 ~ 14615408 (+)
G20167 NA other downstream 379879 14618994 ~ 14622858 (+)
G20172 rps11,LOC107674708 other downstream 425804 14664919 ~ 14671568 (+)
G20286 LOC107581737,LOC107654534 other downstream 909997 15149112 ~ 15184873 (+)

Expression


Co-expression Network