CI01000046_05335886_05341205 (GPATCH8)


Basic Information

Item Value
gene id CI01000046_05335886_05341205
gene name GPATCH8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5335886 ~ 5341888 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05335886_05341205.mRNA
GCTGTCCCGCCCCGAGTTTTCTCTTATATCTGAACAAAAGTCTAACCTCTGTCCTATGTCTCTCTCTGCCTCTCGCCCCCAACCTCATAGGACGAACTGACCCAGTGCCCATCGTCCTCAAATATGACGTCATGGGAATGGGGCGAATGGAAATGGAGCTGGACTATGCAGAAGATGCCACAGAGAAGCGCCGGGTGTTGGAAGTGGAAAAAGAAGACACAGAGGAACTGCGTCAAAAATACAAGGATTATGCAGAGAAGGAAAAAGCCATTGCTAAAGCTCTAGAGGAACTGAGGGCCAACTTCTACTGTGAACTGTGTGATAAGCAATACCAGAAACATCAGGAGTTTGACAATCATATCAACTCCTACGATCATGCACACAAGCAGAGACTGAAGGAGCTGAAGCAGAGGGAGTATGCTCGGAATGTGTCTTCTCGTTCTAAAAAGGATTGCAGAAAACAGGAGAGGATGCTGCGGCGGCTTCATGAACTGGCCGAACAGAGGAAACAGCAAGACCATGTCCCTGGTAGTGGCCCTATGTTTAAAACCACCACAGTGGCAGTAGATGGAGAAAAGGGGGAAGACTCCATGGATGGTGTGCCTATGACAGTGGATACCAACACAGAGGCTATTGAAGATAAGGGAATCTGTAGTGTTAGTGGTCAAGGCTCCCCTAGAACAGGCCCTACCATCAGCTTTGGGTTTAACAAGACTAGCTCTTCTCCAACACCCTCTGGAGGCTCACAGGCTCCCAAAGTCAGTGTCTCCTTCTCTTTTGCTAAGAAAGCCCCAGTCAAACTTGAGACAGCTGCAGCTTTCTTTGCAGACCATGGTGAAGAGACAGTGGAAGGAGAAGAAGGTCAGGAAGAGGGAGGAGAAAAGACTGGAGGAGAGGATTTGAAGATGATGATGAAAAAGGAGGAAGGTTACTCTGGACAGGAGCCACAGTATTACCATTACGTACCTCCTGCACATTGTCGGGTCAAGCCCCATTTCCAGTTTCTGCTTTTCATGAAGGCTACAGACCAGTGTGATAGCAAGGAGGATGAGGATGGAGCAAAAGATGAGAAGGCAGCAGCAGGTAATGTTGGAGAGCAAAAACATATCAAAGTCAGCAGCTGCACATCTGAAAAAGACCCTGAGAATGAACCTGCACAGGCACAAAGCTCAAATCCCTCTCCCACATTAGCTAAAGTGAACACAGAGGAAGAATCAGGTAGTACAGCTGCAGGGCAAAGTGATACAGCAGTAGTAGTTAGCTTGTGCCAACCAGCTGATGCCAAGCAAGGGATATCAGAGTCACCAGACACAGGTCCCCGCATGCCAACTGGGCCTTTCTTTCCTGTGCTAAGTAAGGATGAAAGCACTACCTTGCAATGGCCTTCTGAATTGTTGGAATTTACTAAGGCTCAGCCATCTCTCTCCTACAGTTGTAATCCTCTTTACTTTGACTTCAAACTGTCAAGAAACAAAGGAAACTGGGCAAGCAAAAACAGCAAACCTACCAAGGCAGTTAGCACTGATGGACAAGAGGGTTCTAAGCCTGAAAACACAGACAGTACTCCTGACACTAGTGGAGAGACTTGCACTGCTACATCGGTTGCAGGACCCAGTACTGTTCAAAAAGAACAATCTTTATTGAAAGGGGAGGGTGCTGAGAGTGAGAACAATGAGAAGAAATTACAAAGTAATGAAGATGTGTCTGCAGGGTCTAAGAAAAAGAAAAAGAAGAAGAAACACAAGAAGTCAAGCAAGCGTTCCAAACAGGGAGGTGGCAGTAAGGAAAAAGAGAAAGACAAGGATGACAAAGATGGAGTATCCACTGCTCAGTCATCAGGAGTAAGCACATCCCTTGAGGGAGGAAAGAGAAAACGGTCCCACAAAATGTCTCAGTTGTCTGGAGTTGAGGAAAGCAGTGCAGGAAAACCTAGCTCTAAAGAGGAACACAATGGTACTAAACGTCTTAAATCTGACACCAGTACACCTGCTGCCTCCTGCTCTGCCTCAGCCCAAAAGAGCTTAAGTGGAGGTCGACCTCCAAGCAGTGACAGTGAGGAGGATGGAGGATCATCCTCTCAACGTTCTCGACCAGCTCGCCGTCGCTCCACACCACCACGTCGTCTCGTCGAGGAGACCACAACCATAGACGCCACAGAGGACAAAAGTCACGCAGTCGATCCTACTCAAGTAGCTCCGAGCGTTCCTCAGCAGGGAGCAGTGCTTACAGTCGCCGTAGCCATAGCTATTCAGACAGTTACAGTGACTACAGTGATGAAGAACGTCGCCACAGATCAAGAATACCCTCCTCAGACTCAGACTATGAGAGGCGTGATAGTGGGCGATCTCACAGGCGACATTACTCCTCATCTTCTTCAGAGGAAGACTCGCGTTCACGTTCACGCTCACATAGCCGCAGGAAACATCATCGGCGGAGACACCAACGGAGCAGTAGTCGCAGCTCCAGTCGTAGTAGTAGGAGTAGCAGCGCCCGTTCCTACAGACGCAGCAGCTACAGTCGCAGCCGTAGCTCTGCCAGTCGTTCATCTAGCTCCACCAAGGGCTCTCCACATCGACATGGACACAGCCGGCGATCTGACAGCTCAACACGGCGACGGGATTTCAACCGATCGCGAATCTACCGTTCCCAGTCTCCTAGGTCTTCTTCCCGCACACAATCCCGAAACAGCAATTCTTCATCTGTACAAGGAACTAGAGGTGGTGGTGGAGCTTCCTCAAAGGAGGGTGGAGGTGCTGCAGAACATCGAAATTCATTCACAGCTCGACAACTCTTGGAGAAAATCCAATCTCGAAAAGGAGGGGATGACTCTGGTACTGGCACTAAGACAGGCATCAAGATCAAGGACCCTCCACAGGGATACTTTGGGCCCAAGCTCCCCCCTGCCCTTGGAAACAAAAGAGGCTGTATCAAATGCTGCAGTGCCCGAGGAGACTAGACATCCACCCTCAGACCCTCCAGCCCTTCATGAGTCTCAGCCACAATATGAGCAGGATCCAGCAATGATGATGTCACAATACCAAGGTGAGCCAAGACAAGACCCTAGTAACCCCATGTTGGACGGGCATCTAATGGGGTCCGAGATGGGACCGCAGCCTTCTATGCACGCCTACCCTGGTTACCCCCCTCCCACAATGGAGGATGGGGACATGGGCATGGAAGCTGAAGAGGATGGTCTTGCACCTTTAGAAAGTCAACCAATCACCTTTACCCCAGAGGAAATGGAGAAATACAGCAAGTTGCAACAAGCAGCTCAACAGCACATTCAACAGCAACTGTTGGCTAAGCAGGTGAAGAGCTTCCCCTCAGCTGCAGCTGCTGCAGCGGCAGCTAACTTGGCAGCAGCAGCTAACCTTGCCCCTGCACCGCCACCACCACCAGCTGCACTGCAGCCTATCCACATCCAGCAACCTACAGTTTCTGCAGCTTCTGCTACCTCTATTACCACAGTGCAGCACGCCATCCTGCAACACCACGCTGCTGCCATGGGCCTTCATCCCCATAATCCACATCATCCCCACCCTGCCCATGCCCAGCTAGCCCAGGCCAGCCCATACATATTATACCAGCCTCTGCCCTTCATCACACCCCTCTTGCTCTACACCACATCCCCCATGCTGCCCTCTACCCAACGCTTTTCGCCCCTCGGCCAGCCTCTGCTGCGGCAGCGGCTGCCCTACAGCTACACCCACTTCTGCATCCTATCTTCTCAGGGCAGGACCTTCAGCACCCTCCAAACCATGGCTCCTGAAAGTCCAGCTTCTCTCAAAGAGAAGGCCTGGCCAAGCAGCGTGTAAAGCTGAAGAGTTTTAGCTAATGGGTGGCTCAGTCTGGTGACCCATAGTCCTCCTCTGTCCTCTACGTCCTCTGCTACCTTAGGGTGACCTCAACAGGGCTGTTTAGGATTGCATTTAAATCGAGGACAGAATAAGATCTTGTCTGCCTTTTGAGATTGCAATGTTATGAAATTGTATGTCCTGAACCAGGAGCTAGGTTGGTTGGTTAAGGTATGTAACACAAGGAGTATGAGTTGGTTTATAGGCCAAGACATGGATCTTACAACTAGGAAACCACTGGCGTATTGTTTCATTTTGTATGGTATGTCAAATTTTTGTTTTTTTTCCTGACGTGTTTCTTGTATCCAGAAGCTCACTTGCTGAAGCCATAATCAAGATCTTTGTTGTGGGCTTTTAGCGTGGTTGTATACAGTTGATAATGGGTGGTCTTTAAGGGTCACTTTTGGAGATTTTGTTTTTTTTGTGTACTAAGCATTCATGAAAGTTGCAGAGTTTAAGAATTAACACATTGTATGAATATGCAAAGATACACTTAAGCCTGCTATTCAGAAACCAGGCTGTGATAAACTGATGATTGGTTTGCTGTAGGATTATCATATTTGGTCATTTTCAGCACACCAATCATCAAAAACCATTGTACTATACTCTGATTAAAGGGTATCACGAAACATGAACAAGATGAA

Function

symbol description
gpatch8 Predicted to enable metal ion binding activity and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human GPATCH8 (G-patch domain containing 8).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05335886_05341205.mRNA True 4498 mRNA 0.49 10 5335886 5341888

Neighbor

gene id symbol gene type direction distance location
CI01000046_05315583_05316990 NA coding upstream 18797 5315185 ~ 5317089 (+)
CI01000046_05305482_05310465 NA coding upstream 25407 5305193 ~ 5310479 (+)
CI01000046_05279865_05281709 BAXA, BAX coding upstream 53759 5279865 ~ 5282127 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 455217 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 482710 4841558 ~ 4853176 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 50095 5391983 ~ 5402075 (+)
CI01000046_05481838_05537970 NA coding downstream 139950 5481838 ~ 5538151 (+)
CI01000046_05562155_05568637 MLX coding downstream 220069 5561957 ~ 5569463 (+)
CI01000046_05635252_05642052 DLX4A coding downstream 291883 5633771 ~ 5642292 (+)
CI01000046_05643458_05646109 DUSP3B coding downstream 301570 5643458 ~ 5646116 (+)
G197391 NA non-coding upstream 9688 5289001 ~ 5326198 (+)
G197372 NA non-coding upstream 41479 5291971 ~ 5294407 (+)
G197352 NA non-coding upstream 59433 5259318 ~ 5276453 (+)
G197393 NA non-coding upstream 79104 5249761 ~ 5256782 (+)
G197457 NA non-coding upstream 87304 5248350 ~ 5248582 (+)
G197383 NA non-coding downstream 39233 5381121 ~ 5384299 (+)
G197399 NA non-coding downstream 44582 5386470 ~ 5386716 (+)
G197466 NA non-coding downstream 49234 5391122 ~ 5391352 (+)
G197386 NA non-coding downstream 89567 5431455 ~ 5769358 (+)
G197410 NA non-coding downstream 245293 5587181 ~ 5625506 (+)
G196869 NA other upstream 914199 4415530 ~ 4421687 (+)
G197121 NA other upstream 964456 4371011 ~ 4371430 (+)
G197055 NA other upstream 1186106 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1390386 3943794 ~ 3945500 (+)
G197528 NA other downstream 384233 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1478050 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location