CI01000046_05643458_05646109 (DUSP3B)


Basic Information

Item Value
gene id CI01000046_05643458_05646109
gene name DUSP3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5643458 ~ 5646116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05643458_05646109.mRNA
ATGGCAGACTATGAAGTGTCTGTTCAACAGCTCAATGATCTGTTGACAGATGAAAACGGAGACTTCTGTATGCCCTCCAAACATTTTAATGAAGTCTACCCCGGGATACTCCTAGGAAATGAGTCTGTAGCCACAAATGTAACACGTTTGCTTCAGCTGGGAGTGACGCACATCCTCAATGCTGCAGAAGGCCAATCGGACATGCATGTGAACACGGATGCAGAGTTCTACGCAGACACTGGGATCATCTATCATGGGATACCAGCCTTTGACACTGACCATTTTGACCTCAGTGTATATTTTGAAGAGGCTTCTAATTTTATTGAAAGAGCTCTGGCAATAAAAGGTAAAGTGTATGTACACTGTCAGAAAGGCTACAGTCGATCGGCTGCATTAGTCATCGCACACCTGATGCTGCAGCACAGGATGGATGTACGAACGGCTGTGGCCACAGTAAGAGAGAAACGGGAGATCGGACCCAATGATGGATTCCTGCGCCAGCTCTGCCAGCTAAACGATTGGCTGGATGGTGAAGGAAGGCTGGGTGATTAATACCTAA

Function

symbol description
dusp3b Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP3 (dual specificity phosphatase 3).

GO:

id name namespace
GO:0045931 positive regulation of mitotic cell cycle biological_process

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05643458_05646109.mRNA True 559 mRNA 0.47 3 5643458 5646116

Neighbor

gene id symbol gene type direction distance location
CI01000046_05635252_05642052 DLX4A coding upstream 1166 5633771 ~ 5642292 (+)
CI01000046_05562155_05568637 MLX coding upstream 73995 5561957 ~ 5569463 (+)
CI01000046_05481838_05537970 NA coding upstream 105307 5481838 ~ 5538151 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding upstream 241383 5391983 ~ 5402075 (+)
CI01000046_05335886_05341205 GPATCH8 coding upstream 301570 5335886 ~ 5341888 (+)
CI01000046_05686868_05688748 NA coding downstream 38422 5684538 ~ 5689380 (+)
CI01000046_05756222_05757145 CDK5R1A coding downstream 109914 5756030 ~ 5757489 (+)
CI01000046_05775279_05805016 NA coding downstream 129163 5775279 ~ 5805114 (+)
CI01000046_05808927_05820706 NA coding downstream 161504 5807557 ~ 5820759 (+)
CI01000046_05824195_05829999 NA coding downstream 177499 5823615 ~ 5830050 (+)
G197410 NA non-coding upstream 17952 5587181 ~ 5625506 (+)
G197466 NA non-coding upstream 252106 5391122 ~ 5391352 (+)
G197399 NA non-coding upstream 256742 5386470 ~ 5386716 (+)
G197383 NA non-coding upstream 259159 5381121 ~ 5384299 (+)
G197372 NA non-coding upstream 349051 5291971 ~ 5294407 (+)
G197417 NA non-coding downstream 9463 5655579 ~ 5665352 (+)
G197529 NA non-coding downstream 70240 5716356 ~ 5719969 (+)
G197355 NA non-coding downstream 97453 5743569 ~ 5746418 (+)
G197377 NA non-coding downstream 160370 5806486 ~ 5807376 (+)
G197352 NA other upstream 367005 5259318 ~ 5276453 (+)
G196869 NA other upstream 1221771 4415530 ~ 4421687 (+)
G197121 NA other upstream 1272028 4371011 ~ 4371430 (+)
G197055 NA other upstream 1493678 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1697958 3943794 ~ 3945500 (+)
G197528 NA other downstream 80005 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1173822 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025537 dusp3b coding NC_007114.7 CM002887.2 34683096 ~ 34688277 (+)