G197417


Basic Information

Item Value
gene id G197417
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5655579 ~ 5665352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224119
CATGCCATCATTTTTCCAGTTTATGACATTTTTGACTGTACTGGAGTTCCTATTTAATTATACTAAATTTTCTTTTTCATTTAGTGAAAACAAATTACATTTATGTGGGAAAAAATAATATTTTACAAATATATTACAAATAAATATTAAAATTATACATTTAAAAATTAAAATTCCATGAAAATATTTAAAATTTGAAAAAAAAAAAAAAAAAAATCTAAATGTAAATTAATAATTATAATTTTACAAGTAATACATTTAAAATTATGAAAATTGTAATTGAAAAAAAAAAGTCTGTATTGGGGCCAGTTGAAGTGTTGGCTGGTAAGCACAAATATACATTTTCTAGCTCATTTTCTAGCACAGAAAACCAGTTCTTATTGTCTGGCCTTGTTTTGACAATGACAAATCTGGCTTTAAAAAAAAAGGTCTTTTGGGATTCCTGGTGCAATTAGACATCTCTCTTAAACTAGAGGCTTCAGTGTCCCCCAATGTAACAAGCCAACAAGTGATCATTTGTGATCATTATGTGTTCACATGAGCAATTAGAGTGGCAAAATAACAAGTGGTTCAAAGCACAGCAACAGCCCATAATCACAGCCAGTGCTTTAATGAAGCCATTACTCAAATGCAGCAGCAAACAAAGCGGATGTGAAACTAAAGGAAACACACAAGCAGCCGTGGTTCAGAAAGTACAGGGACAGCTGGAGTCAAGCAGATAATTGCTCCTTCACAGCACTATGACAGTTGCTGCAATAATGCAGCACAGTGTTATTTAGGCTTTTTCAGGCCCGATGGAGAATTCAGCCATTTTATGTGTAGTACTCTACAACAACAGACACTGACCTCAGAGAACATGGGCAGTTTTTTGGCAAAGTCCACGACTCGTGTGATGGCAGGGGTGATAATCTTGGTGAACTCACTGAAGGCCTCCAGGTCGACTTTGTCGTTGTCTGATGTGGGTGCTGGAGACTGCCCAATGTCTTCTGGTAGGAATTTGCGTTTCTGTTTCCAGTGAGGGCCCTGGGCGTTGGTGTGGCGATGAGCCTCCGTCACCATACGAATGAGCTCCCACTCCGAGGCAGTGGGCTCAGGTCGGTTGTGCAGTGTTTTCACAATCTCCTCTTTCTTCCTCCGTTCCCGGTTTTCCTCGATCAGACGCCTCTTGGCCACACGCTTTGAATCATCCAGCACCAAGTCAATGGCCATGCCCACTGAGATGCACTTCTTGAAACGGCACAGCTGGCACTGGTTTCGGGTGATTTTATCAATGATGCAGCAGCTGTCATATTTACAAGAATAGGAAGGGTGAAGATTCTTCTGTATTGTCCTCCTGAAGAAACCCTTGCAGCCCTCACATGTGATGCAGCGGTAATGGTAGCCGGTGGCCTTGTCCCCGCACACCACACATGGCTCATCTTTCTCCAGGTAGCTGGGAACATACCCTAGAACAGAGATGCTATTCACAGACGTGCTCTTTATAGAGCATTGACTATTCTTTCTTTTTCTTTTCACTCCATTCGGCCACCTGTTGACATAATAGTGCTGTAAAATGTGCATGATTGCCGTCTCCCTCCTCTTGCCAAGCTGTCAGCAATCTATCTGCAGTAACAGGGACTCTGAGCTGGTAGGATGACACTTCTCTCACCAACCCCATCCCATCCCTCTCTCCCTCCACACACACACACACACACACACACACCTCCTGCCACAGCTCGTGTGCATCAGCCCTGTGAGCCCCACCTCTCTTCCATCACTTACCCTCAGCTCTCATCTTCCACTTCACTCTCTCGATGTTTCTGTCTGACAAAATCATACGCAATGAAGCAAAGGACCCTCTGTCATCTGTCTTTAGCTAAATATAGACTCCTACAGTGTTTCATACTCCAAATACCAAATACTAATATTCAGCTTCAGTATTTCTAGTATATTAATACATTCATGCATAAATCATCAACAGAACTATGTTAGAGCTGAACACAGTGTTATCCATCTTCAGTGTACCAATTTAATGCAAAAAAAATAAAAAAATCAGGCCAGATATACAGGAGTTCAAAATACTGAGACCACTAGTGAAAATACAAATATTTTGCATTATTCTGAATTTATATATGTCCTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224119 True 2122 lncRNA 0.41 6 5655579 5665352

Neighbor

gene id symbol gene type direction distance location
CI01000046_05643458_05646109 DUSP3B coding upstream 9463 5643458 ~ 5646116 (+)
CI01000046_05635252_05642052 DLX4A coding upstream 13287 5633771 ~ 5642292 (+)
CI01000046_05562155_05568637 MLX coding upstream 86116 5561957 ~ 5569463 (+)
CI01000046_05481838_05537970 NA coding upstream 117428 5481838 ~ 5538151 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding upstream 253504 5391983 ~ 5402075 (+)
CI01000046_05686868_05688748 NA coding downstream 19186 5684538 ~ 5689380 (+)
CI01000046_05756222_05757145 CDK5R1A coding downstream 90678 5756030 ~ 5757489 (+)
CI01000046_05775279_05805016 NA coding downstream 109927 5775279 ~ 5805114 (+)
CI01000046_05808927_05820706 NA coding downstream 142268 5807557 ~ 5820759 (+)
CI01000046_05824195_05829999 NA coding downstream 158263 5823615 ~ 5830050 (+)
G197410 NA non-coding upstream 30073 5587181 ~ 5625506 (+)
G197466 NA non-coding upstream 264227 5391122 ~ 5391352 (+)
G197399 NA non-coding upstream 268863 5386470 ~ 5386716 (+)
G197383 NA non-coding upstream 271280 5381121 ~ 5384299 (+)
G197391 NA non-coding upstream 329381 5289001 ~ 5326198 (+)
G197529 NA non-coding downstream 51004 5716356 ~ 5719969 (+)
G197355 NA non-coding downstream 78217 5743569 ~ 5746418 (+)
G197377 NA non-coding downstream 141134 5806486 ~ 5807376 (+)
G197570 NA non-coding downstream 293100 5958452 ~ 5960575 (+)
G197352 NA other upstream 379126 5259318 ~ 5276453 (+)
G196869 NA other upstream 1233892 4415530 ~ 4421687 (+)
G197121 NA other upstream 1284149 4371011 ~ 4371430 (+)
G197055 NA other upstream 1505799 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1710079 3943794 ~ 3945500 (+)
G197528 NA other downstream 60769 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1154586 6808507 ~ 6821543 (+)

Expression


Co-expression Network