CI01000046_05808927_05820706


Basic Information

Item Value
gene id CI01000046_05808927_05820706
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5807557 ~ 5820759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05808927_05820706.mRNA
GTATAAATGTAAACTTATTGTTGAGCTCTGAGTTGTATTTTTATTTTTGTTCTTACACATTTACTTGTGTGAGGATTTTATATGTTATAATGTGCCCTAACTGAAAATAGTACTGAATTTTCTCTTCAGACTTTCCGATAGTGCTGAAATCTGTTGCCCAGATGTGACTCACTATTTCATCCTTCTCATTCAGTTCTTGCTTTATATATTTCTATCTTGCATCAGGTCACGTTTTTATGAAACAGTGATGGATTTCAACAAAAAAAAAAAAAAAAAAAAAATGAATCGTTCAACACAGAACAGTAAACAGACACACACAAGTATTCCTCGCCTATGCAATTGGGACAAGACCTAATCTCAAATTCAGCCTGTTTAGCTCCACTGTTGGGTGATGTGTACATGTATATGCGTTTCATGGCCTGATTCTTGTTAGTGAATTTCATATTTTATATTTTAGGTATTGTGGGGGTTATGTAGTACGATGTAAATGTTAGAATTAAATTTGTCTAAGAAAAGTCAAGAGTCTTGATTTTGTGACGAGGCACAGTGATGTATTTATATTAAAAATGTTTTAATAATTACGTGGATGTTGTTAAAGGTTAATTTGTTGAAAATAAGTCATGTGCTCACGTGTCAACAGGCCTGTATATCTACGCAGCTAGATAATGTTTTTTAAAGCGTGTGTGTTAGTTAGCACTCAAATCTGCGTTAGTAAATAAATAAAGTGGTAGATTAATAAAAGACAATGATTGCATGTTTTTCCTTAATACGCGCTCATGTTACTAATTTTGTAAGTAATGAACAGGAATGTGATGTTTTCTAATCCTGTTAAGCCTCAAACCAGCAGGAAAGTAATTGCATTAGAGTTTGAATAGATGTCAAAACTAACCGCATTCTCAAGCGAGCGTCACGGGAGCGCGAGCCCCGCCTGCAGGGGGATTAGCACGCGCTAAACCTCAGATCCGCGCGCTCTGTCAGGTAACGCCGCAAACACCATCCACGATTAACCTAACAGCACAAACAAGGATGAATAAAGATATTGGTTTGGTCTAATTTGGTTTTCGCGATACCAGCCGACAGGTCGGTGTCTGGACTTGCAAGTTTCCACGCTGTGAGCTGTCAAGTGGTTTATCTTTTAGTACATTTCAGAGTAAATCTGCGCGGTGGGTCGCATCTTTTGGAGAGGACGATGTTCATCATATTTGAGAGTGACGGGAGCGCGCGAGTCAGCGTAGCTCGCGGCGAATGACGCTTCAGACTTTGAACCAAGTGTTATCAAGTTAATTACCGGATGGACTAAATGAAGAATGCCGCACGTTTGGGAGTTCATTCTGATTCTCAACGTCAATGTCGTCTTTGTAGAAGCACAGCCAGCGTCATCAAAGCTGCACGATGGTTGGTGGGCATACAAAGATCTTGTCCAAGGGAGCTTTATACCAGATCATGATTCATTACAAAACGGCAAACGCGACAGTCTGCTGCTGAAATTTAAAGCAAATGCTCTAAACTTCACTTTTTATGTTTATATTTTACTAGTGCCATCTTTCTGGGGACTAGTTAACACTGCCTGGAACCTGTGTGCGATTGGGAAGAGACAGTCGCCTGTCAACATCGAAACCAGTCGAATGATTTTTGACCCCTTCCTCAACCCACTCCGACTTAATGCAGGGCAACGGAAGGGACTGTCAGTGAAGAATTCTCCAATGAAGCTCCAAGAGGTTGTGGTTATGGATGATACACCGTAGTTCATCTTCTCTCAATAATACATTAGTACCCCAGACTTAGTCAGGAACCCGGA
>TU224077
ACACAATTTTCATTTTTGGGTGAACTAACCCTTTAAACATCAATGAATGTGAATGTTAAATCAGTATAAATGTAAACTTATTGTTGAGCTCTGAGTTGTATTTTTATTTTTGTTCTTACACATTTACTTGTGTGAGGATTTTATATGTTATAATGTGCCCTAACTGAAAATAGTACTGAATTTTCTCTTCAGACTTTCCGATAGTGCTGAAATCTGTTGCCCAGATGTGACTCACTATTTCATCCTTCTCATTCAGTTCTTGCTTTATATATTTCTATCTTGCATCAGGTCACGTTTTTATGAAACAGTGATGGATTTCAACAAAAAAAAAAAAAAAAAAAAAATGAATCGTTCAACACAGAACAGTAAACAGACACACACAAGTATTCCTCGCCTATGCAATTGGGACAAGACCTAATCTCAAATTCAGCCTGTTTAGCTCCACTGTTGGGTGATGTGTACATGTATATGCGTTTCATGGCCTGATTCTTGTTAGTGAATTTCATATTTTATATTTTAGGTATTGTGGGGGTTATGTAGTACGATGTAAATGTTAGAATTAAATTTGTCTAAGAAAAGTCAAGAGTCTTGATTTTGTGACGAGGCACAGTGATGTATTTATATTAAAAATGTTTTAATAATTACGTGGATGTTGTTAAAGGTTAATTTGTTGAAAATAAGTCATGTGCTCACGTGTCAACAGGCCTGTATATCTACGCAGCTAGATAATGTTTTTTAAAGCGTGTGTGTTAGTTAGCACTCAAATCTGCGTTAGTAAATAAATAAAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05808927_05820706.mRNA False 1798 mRNA 0.40 4 5807620 5820759
TU224077 True 791 lncRNA 0.32 1 5807557 5808347

Neighbor

gene id symbol gene type direction distance location
CI01000046_05775279_05805016 NA coding upstream 2506 5775279 ~ 5805114 (+)
CI01000046_05756222_05757145 CDK5R1A coding upstream 50131 5756030 ~ 5757489 (+)
CI01000046_05686868_05688748 NA coding upstream 118240 5684538 ~ 5689380 (+)
CI01000046_05643458_05646109 DUSP3B coding upstream 161504 5643458 ~ 5646116 (+)
CI01000046_05635252_05642052 DLX4A coding upstream 165328 5633771 ~ 5642292 (+)
CI01000046_05824195_05829999 NA coding downstream 2856 5823615 ~ 5830050 (+)
CI01000046_05837676_05841480 SMARCE1 coding downstream 16917 5837676 ~ 5841825 (+)
CI01000046_05845746_05851051 NA coding downstream 24987 5845746 ~ 5851184 (+)
CI01000046_05881459_05890971 NA coding downstream 60348 5881107 ~ 5891540 (+)
CI01000046_05904400_05973821 PRKCB, PRKCBB coding downstream 83641 5904400 ~ 5973821 (+)
G197377 NA non-coding upstream 244 5806486 ~ 5807376 (+)
G197386 NA non-coding upstream 38262 5431455 ~ 5769358 (+)
G197355 NA non-coding upstream 61202 5743569 ~ 5746418 (+)
G197529 NA non-coding upstream 87651 5716356 ~ 5719969 (+)
G197417 NA non-coding upstream 142268 5655579 ~ 5665352 (+)
G197570 NA non-coding downstream 137693 5958452 ~ 5960575 (+)
G197574 NA non-coding downstream 172714 5993473 ~ 5993694 (+)
G197593 NA non-coding downstream 190401 6011160 ~ 6011454 (+)
G197595 NA non-coding downstream 194255 6015014 ~ 6015220 (+)
G197427 NA non-coding downstream 278440 6099199 ~ 6099494 (+)
G197528 NA other upstream 64936 5726121 ~ 5742684 (+)
G197352 NA other upstream 531167 5259318 ~ 5276453 (+)
G196869 NA other upstream 1385933 4415530 ~ 4421687 (+)
G197121 NA other upstream 1436190 4371011 ~ 4371430 (+)
G197055 NA other upstream 1657840 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 999179 6808507 ~ 6821543 (+)

Expression


Co-expression Network