G197574


Basic Information

Item Value
gene id G197574
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5993473 ~ 5993694 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224283
AATGCAAACATAGTTTTCAAAATGTCCATCATGTGGAGTATCTCACGTAAATACAGTCGGTTATGGCTTAAGTGGACGTAAACATTTGGGTAAAAACAGGATATGTGTCAGTATCCATGGATTCGGTCTTAAAGGGACCGTAGCCTATATTTGTCATTAATGTTAATAAAACAACAAAATATGTTAAATAAATGTATACATGGTAAATAAACCTACTGTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224283 True 222 lncRNA 0.33 1 5993473 5993694

Neighbor

gene id symbol gene type direction distance location
CI01000046_05976907_05986013 PRKCB coding upstream 6299 5976338 ~ 5987174 (+)
CI01000046_05904400_05973821 PRKCB, PRKCBB coding upstream 19652 5904400 ~ 5973821 (+)
CI01000046_05881459_05890971 NA coding upstream 101933 5881107 ~ 5891540 (+)
CI01000046_05845746_05851051 NA coding upstream 142289 5845746 ~ 5851184 (+)
CI01000046_05837676_05841480 SMARCE1 coding upstream 151648 5837676 ~ 5841825 (+)
CI01000046_06028164_06033411 NA coding downstream 34262 6027956 ~ 6033709 (+)
CI01000046_06042369_06053825 CACNG3B, CACNG3 coding downstream 48582 6042276 ~ 6054514 (+)
CI01000046_06077232_06091190 RBBP6 coding downstream 83538 6077232 ~ 6091600 (+)
CI01000046_06145016_06162787 TNRC6A coding downstream 151322 6145016 ~ 6162787 (+)
CI01000046_06168140_06169381 RPUSD1 coding downstream 174118 6167812 ~ 6169504 (+)
G197570 NA non-coding upstream 32898 5958452 ~ 5960575 (+)
CI01000046_05808927_05820706 NA non-coding upstream 185126 5807557 ~ 5820759 (+)
G197377 NA non-coding upstream 186097 5806486 ~ 5807376 (+)
G197355 NA non-coding upstream 247055 5743569 ~ 5746418 (+)
G197529 NA non-coding upstream 273504 5716356 ~ 5719969 (+)
G197593 NA non-coding downstream 17466 6011160 ~ 6011454 (+)
G197595 NA non-coding downstream 21320 6015014 ~ 6015220 (+)
G197427 NA non-coding downstream 105505 6099199 ~ 6099494 (+)
G197400 NA non-coding downstream 128874 6122568 ~ 6123192 (+)
G197605 NA non-coding downstream 184703 6178397 ~ 6178613 (+)
G197528 NA other upstream 250789 5726121 ~ 5742684 (+)
G197352 NA other upstream 717020 5259318 ~ 5276453 (+)
G196869 NA other upstream 1571786 4415530 ~ 4421687 (+)
G197121 NA other upstream 1622043 4371011 ~ 4371430 (+)
G197055 NA other upstream 1843693 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 826244 6808507 ~ 6821543 (+)

Expression


Co-expression Network