CI01000046_06168140_06169381 (RPUSD1)


Basic Information

Item Value
gene id CI01000046_06168140_06169381
gene name RPUSD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6167812 ~ 6169504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06168140_06169381.mRNA
ATATAAAAACGTCCAAGTATTTTTTGCACGATTAGTGAAGAAAATATGTACGATATAATGTTTTCTCTAAAGGAGAAGGTTTGCATATTCGCGCAGAGACAAAATAAACAAGATGACTTGAAGTGAATGATCCACAACCAGCATGCTGCACAACAACAGTTAAAGCAGGTATTTATTTTTATGTCAGTTTTATATAGTTTTTCTAAAAGAGACATAAAATGGTGGCACATTTACATAGAGAATATTTTAATATGTTACAAATAATGTCAAAATTTGTTGATATACCATACAGAATAACCTTGGTGTTGCTTTGCAGGAGATAGAGACCATGGAGCCTGCGAGTCTGGAAAACTTGTGTGTTTTGTACCACAGTGCAAACTATATAGTTGTCAACAAACACTGGGACATCCGTATTGACAGCAAAATGTGGTATGAGAAGCAGACTGTTCAAAGTCAGCTGAAGCATCGCTTCCCAGAACTTGCAGATCCTGACACCTACTACGGATTCAGGTTTTGCCATCAGTTGGATTTCTCTACCAGTGGTGCTTTGTGTGTAGCACTGAACAAGGCAGCAGCAGGACATGCGTACCGCTGTTTTAAAGACAGACTTGTTACCAAAGCTTATCTTGCTTTGGTCCGTGGTGTTGTGGCTGAGGAGAAAATGACCCTGGACTTTGCGATAGGCAAGAACACAACAGAGGGCAAGACCCATATGATGTGCACTGAAGGAACAGAAGGTTGTGAGAATCCCAAGCCTTGCCAAACAGAGCTCACTGTTTTAGAGTATGGAGCATATGATGGAGATCCAGTCACAAAAGTGCTTCTACAGCCTCTGACAGTGGGCGACTATACCTACAGTCTACGCACAGACAATGCTCCGTATCGCATGATGCTGCACGCCTACTTCCTCCACATTCCACTAGAGAATGAACCCATCCATGTCATAGCCCCAGATCCCTTTATACCCAGCCTCGACCTCAAATGGGCACCACAAAGATGTGTGAACATTCTGGAGGATTTACTGAAGAATATTTTAACAAAGCCACAAGCTGAGATCCAAGAAGAACCAGAGCCAGTGCACAAGAGGAGCAGCCCAGTGGAGAGTGAGGAGCAACAGGCACAGTGTCAGCAGTGGTTATGTGAATGGAATCTGGACTGAGGAACACTCGCGCTGTAAACTGCTGAAGCTACGCTGCAGGCTGCTTATAGGGTACCCTCTTCTTTAAAAGGCCAGCCCTCCTCAAGAACAGTGTACAGAAAGAACTGAAGGCATAAAGGGGCA

Function

symbol description
rpusd1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD1 (RNA pseudouridine synthase domain containing 1).

GO:

id name namespace
GO:0031119 tRNA pseudouridine synthesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06168140_06169381.mRNA True 1282 mRNA 0.44 5 6167812 6169504

Neighbor

gene id symbol gene type direction distance location
CI01000046_06145016_06162787 TNRC6A coding upstream 5025 6145016 ~ 6162787 (+)
CI01000046_06077232_06091190 RBBP6 coding upstream 76212 6077232 ~ 6091600 (+)
CI01000046_06042369_06053825 CACNG3B, CACNG3 coding upstream 113298 6042276 ~ 6054514 (+)
CI01000046_06028164_06033411 NA coding upstream 134103 6027956 ~ 6033709 (+)
CI01000046_05976907_05986013 PRKCB coding upstream 180638 5976338 ~ 5987174 (+)
CI01000046_06179800_06180706 NA coding downstream 9690 6179194 ~ 6180917 (+)
CI01000046_06202182_06214539 TRAF7.S, TRAF7 coding downstream 32678 6202182 ~ 6214560 (+)
CI01000046_06330849_06347081 CRLF3 coding downstream 161345 6330849 ~ 6347379 (+)
CI01000046_06362326_06364947 NA coding downstream 192286 6361790 ~ 6371457 (+)
CI01000046_06465424_06470835 SCPEP1 coding downstream 295920 6465424 ~ 6470994 (+)
G197400 NA non-coding upstream 44620 6122568 ~ 6123192 (+)
G197427 NA non-coding upstream 68318 6099199 ~ 6099494 (+)
G197595 NA non-coding upstream 152592 6015014 ~ 6015220 (+)
G197593 NA non-coding upstream 156358 6011160 ~ 6011454 (+)
G197574 NA non-coding upstream 174118 5993473 ~ 5993694 (+)
G197605 NA non-coding downstream 8893 6178397 ~ 6178613 (+)
G197608 NA non-coding downstream 16491 6185995 ~ 6186205 (+)
G197611 NA non-coding downstream 20406 6189910 ~ 6190158 (+)
G197615 NA non-coding downstream 73169 6242673 ~ 6249986 (+)
G197676 NA non-coding downstream 158455 6327959 ~ 6328302 (+)
G197528 NA other upstream 425128 5726121 ~ 5742684 (+)
G197352 NA other upstream 891359 5259318 ~ 5276453 (+)
G196869 NA other upstream 1746125 4415530 ~ 4421687 (+)
G197121 NA other upstream 1796382 4371011 ~ 4371430 (+)
G197055 NA other upstream 2018032 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 650434 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025549 rpusd1 coding NC_007114.7 CM002887.2 35542067 ~ 35549478 (+)