CI01000046_06202182_06214539 (TRAF7.S, TRAF7)


Basic Information

Item Value
gene id CI01000046_06202182_06214539
gene name TRAF7.S, TRAF7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6202182 ~ 6214560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06202182_06214539.mRNA
GCTGCAGCAGCTCTTTTCCACAGGGCTTTGCTGTATTATGAGCTGTTGTAAACCATCACGTTTCGATCGATTCTCAGGAGGATCTGTGGCAGGTGCCACTATCACTGTACCCTCACCTGACATCAGCAACCGGACCAAAATGGAAGCTAGTTTCGGATCCACGTTTCCTGCAGTCCCTCAAGTAGCAAAAGCGGAAACCAATTACAAACAGCATCGTAGAACCCCTTCAACCTCCAGCACTCTGACCTACTCGCCTCGTGACGACGATGATGGCATGCCGCCCATCAGTACCCCTCGTCGCTCAGACTCTGCCATCTCGATTCGCTCCCTGCACTCCGAGTCCAACATGTCGTTGCGCTCCACCTTTTCCCTACACGAGGAAGAGGAAGACACAGAGCCGCAGGTGTTTGCAGAGCAGCCCTCAGTTAAGCTCTGTTGCCAGCTGTGCTGCAGCGTGTTCAAGGACCCCGTCATCACCACCTGCGGACACACATTCTGCAGGCGATGTGCCTTGACCTCAGAGAAATGCCCTGTGGACAATTCCAAGCTCACAGTGGTAGTGAATAACATAGCGGTGGCTGAGCAAATCGGTGAGCTTTTCATCCACTGCAAGTACGGCTGCCGGCCAGCTGCTTCAGGCAAGCCCGGTGCCTTTGAGGTTGACCCACTTGGCTGTCCTTTCACCATCAAGCTCAGCACCAGGAAAGAACATGAAGTGAGCTGCGACTACAGACCTGTTCGCTGTCCCAACAACCCCAACTGCCCTCCACTGCTCACCATGAACCTGGAGGCCCATCTGAAAGAGTGTGAACACATCAAGTGCCCTCATTCTAAATATGGGTATGGAATTTTGGAAAGTTGCACCTTTATTGGGAATCAGGATACATATGAGACGCACCTGGAGGTGTGTAAGTTCGAGGGGCTGAAGGAGTTTCTCCAGCAGACGGATGACAGATTCCATGAGATGCAGGTGACACTGGCACAGAAGGACCAGGACATCTCATTCCTGCGCTCCATGCTGGGCAAACTCTCTGAGAAACTAGACCAGCTGGAGAAGAACTTGGAGCTCAAGTTCGCCTACGACCCTCAGCAGATCTTCAAATGCAAGGGTACCTTTGTGGGCCACCAGGGTCCGGTATGGTGTTTGTGTGTGTATTCTACCGGTGATCTTCTCTTTAGTGGGTCATCAGATAAGTCCATCAAGGTTTGGGACACATGCACCACATACAAGTGCCAGAAGACCCTAGAGGGCCATGACGGCATAGTGTTGGCATTGTGCATTCAGGGGAACAAGCTCTACAGTGGCTCAGCTGATTGCACGATCATTGTTTGGGATATCCAGACCCTGCAGAAAGTGAACACTATTCGGGCACATGACAACCCTGTGTGCACTCTGGTGTCCTCTCACAACATGCTCTTCAGCGGCTCTCTCAAAGCCATTAAGGTGTGGGATATTGTGGGCACAGAGCTGAAGCTAAAGAAGGAACTGACTGGCTTGAATCACTGGGTTCGAGCTCTGGTTGCTTCTCAGAATCATCTGTACAGTGGATCTTATCAAACCATAAAGATCTGGGACATCCGTTCTCTGGAGTGCGTGCATGTGCTCCAGACTTCTGGAGGCAGTGTGTACTCCATTGCAGTCACCAACCACCATATAGTTTGTGGCACCTATGAGAACCTCATTCATGTTTGGGACATTGAGTCCAAAGAACAGGTGCGGACTCTGACAGGCCACGTGGGCACAGTGTATGCCCTGGCCGTTATTTCCACCCCCGATCAGACCAAAGTGTTCAGTGCCTCCTATGATCGCTCTCTCAGGGTGTGGAGCATGGACAACATGATCTGCACCCAAACTCTGCTGCGGCACCAGGGCAGCGTGACGGCACTCGCTGTATCCAGAGGAAGACTGTTCTCTGGAGCTGTAGACAGCACAGTAAAGGTCAGAGGCTCTTACAACCAGTTTGGGGATACTGCTTTGAAAATGTAGCCAGCATTGAAATGTAACACT

Function

symbol description
traf7 Predicted to enable metal ion binding activity. Orthologous to human TRAF7 (TNF receptor associated factor 7).

GO: NA

KEGG:

id description
K10646 TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06202182_06214539.mRNA True 2008 mRNA 0.52 17 6202182 6214560

Neighbor

gene id symbol gene type direction distance location
CI01000046_06179800_06180706 NA coding upstream 21265 6179194 ~ 6180917 (+)
CI01000046_06168140_06169381 RPUSD1 coding upstream 32678 6167812 ~ 6169504 (+)
CI01000046_06145016_06162787 TNRC6A coding upstream 39395 6145016 ~ 6162787 (+)
CI01000046_06077232_06091190 RBBP6 coding upstream 110582 6077232 ~ 6091600 (+)
CI01000046_06042369_06053825 CACNG3B, CACNG3 coding upstream 147668 6042276 ~ 6054514 (+)
CI01000046_06330849_06347081 CRLF3 coding downstream 116289 6330849 ~ 6347379 (+)
CI01000046_06362326_06364947 NA coding downstream 147230 6361790 ~ 6371457 (+)
CI01000046_06465424_06470835 SCPEP1 coding downstream 250864 6465424 ~ 6470994 (+)
CI01000046_06489840_06506540 TUBG1, TUBG1.L, TUBG2 coding downstream 275060 6489620 ~ 6507607 (+)
CI01000046_06553680_06556870 NA coding downstream 337766 6552326 ~ 6557725 (+)
G197611 NA non-coding upstream 12024 6189910 ~ 6190158 (+)
G197608 NA non-coding upstream 15977 6185995 ~ 6186205 (+)
G197605 NA non-coding upstream 23569 6178397 ~ 6178613 (+)
G197400 NA non-coding upstream 78990 6122568 ~ 6123192 (+)
G197427 NA non-coding upstream 102688 6099199 ~ 6099494 (+)
G197615 NA non-coding downstream 28113 6242673 ~ 6249986 (+)
G197676 NA non-coding downstream 113399 6327959 ~ 6328302 (+)
G197680 NA non-coding downstream 166601 6381161 ~ 6381468 (+)
G197683 NA non-coding downstream 169677 6384237 ~ 6384558 (+)
G197528 NA other upstream 459498 5726121 ~ 5742684 (+)
G197352 NA other upstream 925729 5259318 ~ 5276453 (+)
G196869 NA other upstream 1780495 4415530 ~ 4421687 (+)
G197121 NA other upstream 1830752 4371011 ~ 4371430 (+)
G197055 NA other upstream 2052402 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 605378 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location