XLOC_025530


Basic Information

Item Value
gene id XLOC_025530
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34210893 ~ 34217224 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052733
GTTGTTAAAGCCTTTTGTAGCTTTGTTATACATCAAGATACTACTGCGTATTGTAATAAAAGCCTCAGCGATTAATCGCAACAAGAAAATCTGGTATTATGCAGACTATGACAGACATTTTGTTCTTCCTTGTTTTTACAATCTGTGTACCTCAAATCTGGACGCCACAATAACGAAGACTTTGAACTGGCTGCTGTCCAAACGAAACAGACTGGGGACACGGCATTACTACCTGACACAGCCAAGGTACCACCTGTTTGTCACGAccagcacacacactctctcgctCCTTTCATCCTTTCATCCTCGCTCATTCCTCTCTATCTCTCCCCTAGCTTTTGGCGTGCGTTCTGGATGGGCATCTTGGAGCATCTGTGCCTGCCTGAGGCACTGGACTGTGGTAGATGTGGGTCAGAGCTGTAAATCCTGTGTGGTCTTGTACCAAACAGCCATTGTAACTTCAGGAGAAGCCAGATGCCAAGCGTTGCTGATAGATCGCAGAAGctgcatgcaaaataataaaGTCAACAATGAAGGTCATAAGTCAACTTAATGGTTTGTCTGGTGCTTTTCCCTCCATTTCATAAATTAAATCCAAAGCGGAGGCATTCAAGGGAGGAAATTCCGGTTCGTTAGCGCCACCTCCTGGTCAGATTTCATGTTTGCTGATATcctaattcatatttttttcaaacGTGTGTATCAAAACGATAAACACATTACCGGTCAAATTTGgtgtcagtaggatttttaaattgtttaaaataagcttctcctgctcaccaaggctgcatttatgtaatcaaaaatacagtacaaattgtaaaatgttattgcactataaaaataaCGGTTCAAAAGtttataaatgaatttaatagtttattccagttattttaaagatgagtttcatcttcattactccagtcttcagactCACAAGATCCGTCAGACATCACtctaatagtaaaacaaataaataaataaaataataataataataataataataataattattattattattattattattattattattattattatttttattattattattaataataataatatttattgtaaaggtaataaaagcaataatcactggagtaatcatttcatttgaaactacatactataagaaagcagttatttaaaattgtaataagtATTTAACAGTTTTACATTCAATTAATGTTTGTTGATAAACAGAATACTTttcttaaaaaacataaataaaataaaaagtaaaaaaacaattgttaacCCCCATATTTTAGATATTCTAATTCTTGTATCAAATGTCCTATCCTGACAAAGTATACTTTAATAGAAGAGTTATTTACTCAGCTTTCAGGTGATgcacagttgaaatcaaaattattagccctcctgtgcaatttttatttatttttttcaaagaattaccaaatatatatatatatatatatatatttcacaggagggctgatcTTTCTAAGTTCAATTGTAaaaatctcaatttaaaaaaCTGACATTATGACCATGTTTTGTGGTCAGGGTCACATATGAAAAAAACAGGGTCAAGTTCAACTTCAATAGCTGCTGGACAGGCAAATTTGTACTTGAGAAGCACTGGATCTGTGTTATTTTGTCTTTCAAAGATGCACTTTGGTGTTATTAAAAGTGAGGGCTGTGGAAGTGGAGAGGCTGCAGTTGAAACAGTCTCTCACCCACTCACGCTGAGGAGCTTTGAGGGCCGAGGGCTGTTAAATGAGGAGGGagataatgagagagagagaggcagcaGCATGGTAATCAGCAGGCCTCAATTTCCTCACTGATGCTCCAGATTATGCTGGCCTCACAGGCTCCCTTAGGCATGTTTCATCTTCTCTTTCCCCTCAGAGAACGCTTGGGATGAAAGGCAGAAGTTCTCCATCCAGCCTGCTGACAAACCCCATGCTGAGGCCACTGCGCAAAACTCTGCTGATAATCAAGTCAGTTTTTTCTTCTCAATTCATTATCTTTTCTATCCCTTTCTGGTCCATTAGCTACAATTTAAGctctaaaataattgtttatctaGCGTGTTGCCTGTGTTTTATGTCTTGAAATACACACCATTAATTTTAACTTCTATAGTTTCTTCAGTCTCACTGAAAGCAAAGCAGGTTTTGTTATTAATGCTCATGTCCTTTCACCCTTAAACAAATAAAAGCTCATTTCTCGTAATGATGTTTCCATGGAAAATATTGAACTTCCCAAGTGCTGCTTCTACAAAACGTTCTTTGAGAATTTTTTCatgctaaaatgttttttataaatgaaaaaatggGTTTTGAGGGAACAAGATtatgaaattataaaattaataaaaatagttttctaacctttatttttaacaatagAGGAGCTCTGAGTAATATAGGACAAAAGACAAATTCTCATTTTCGAAATACTAATTtccttcattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattattatgctatattattttatatacaagACTGCATTGATCTCAGAaaatgccaaaaagaaaatactttgaaatGTAACTCATTTCTCTGAcgatttttttttgcaacatacCAATGTCTTCAGTGttatccttcagaaattattctaatatgttgatttaatcttcaagaaacatttcttattaacAAGGTTGAAAATagctgtgctgcttaatattttgtgGAAACATTTACTCGTCACTTTTATCAAAAGTCaggcaggcctgtagccagcttgTTGAAAggggtttttcttttttctgaaaaaCTGGACAATGCaattatttgcctcattttctgtttaatcaTGAGGTTTAAATGCtgaattttagtgacattttaagcactatagATCAtgaccacactttttgatgtacgaGAAATATTTCTTACCATTTTGCCAAATTACTTACTatactattttacaatttttagtctttatttacaaatgtgcgattaaactgttagttttatattacagttttataaataatgttgagattagcatttttaattcaaaacttTAGAATGAAGAAAAATGAAAGGATACTTACTTTTAAAGTACAATTTTATTATCATCTatcattaaattatgttttatgaatctgttaaaacttgtttaaaattaaaGATGAAGCCTATacgcaaataacaaactggccagtacATTCAACATTCCTCATTCAGAATTTGGCTATTTGAATAATTCGCAcataatatttaaacataataataataatgatccaACAGAACATTCATcgtggtcttaaagccttctttattggttaatttcacaatttatgatagcAAGTCaaacataatacaaataaatgcaaCCACAAATAAATGAGCTCATATAGGGGaccaattctggacctttgtcagtgggtCTTACGAACCCCACTTTACAGGCTAAGTACCTGTAAAGTTACTACATTTGAGGAAAAATATCAACATGTCTTTAACTTGAGCTTGTACTTTGATTGAGTTGTTGGATCCCCCTTGTGGCCTTTTAAGTAACAGCACAATATTTACCATGCTAGAAGAGTACATACATTGCAAGACTGATTGTGGATCATTATCCctttagcttgttttaaacaatatGTCGAGTATAGAGGCTTTATGATGTAGATAAGAGGCATGCAATGCTGCCTTTATTGTCATTTCATCCTGTTTTGAGTAAGGCCAGGAATTGTGACAGTCACACATTTTTGAACTAACAGCTTCAGGTTTTATCTGCCTTAACTTTCAAATCCTTTTAGCTTCATTTAATTTGCTTGTATTTTACTAGTGGTACTAGTGGGTGATTGTAAACATATCCTTTGCAAGTCAGAAGTTTTAGAACagtaaaaaatacatgttttaaaagaagcaaatataaatgttttattgagcagaaaatatgaatattcaattcaattcagctttatttgtataacgcttttacaatgtagattgtgtcaaagcagcttcacataaatggtcatagtaactggaacagagtagttcagtttttagtgtttaagttcagttgaATATTAGAAGAGTTTCTGAAAGGTTGTGTGACTGGAGTAAATGTGTGAATGCTAAATTCAGCTTTGAAATCATACATTAATTTATTCTTGGCTTagtgagtccctttattaaacaggggtcgccacagcagagtgaaccaccaacttatccttgggttttacacagcagatgcccttccagccacaacccagcactgggaaacactcatacactcttgcattcagactcacactacagccaatttagctcattcaatttgCCTATAGTGcgtgtctttgaactgtgggggaaactggagtacctggaggaaacccacaccaacacagggagaacatgcaaactccacatagaaatgccaactgacccagctgaggcttaaacgggcgactttcttgttgtgaggcgacagcgggacccattgcgccaccgtgtTTCCCCAGCTTTGAAATCACATAAACAAaatcacaaattaaaatatatttaaatagaaatcAGTCATTTAAGACAGCTGAACAGAGAGACCTCaataacaaacaaatcaaaacaacaaaaacattataaatctcaCTTATTCttttcttctgcttagtcccCACATAAAAAATCTTACTGATCATAAAACTTTTAGGTAGTGTATATGATGTGTatcatttgttttgattttaggcATTAAGAGAATGTTGCCTGGGTCCTCACAATGAAGGGTTTTTATTAAAATCCATTAAGCTCAGAAGAGGGGAATCCACCCAATTGCTGAATCCTCACACTAGCACTTACACTTTTAATTACAAAGATTCTTTACTGACCTCCGATAAAGAAACTTCAGGATCAATGGAAACTTTAAATTTGATAATTTAGGGTTGTTTAACAAAAGGTTGCTTAGATTATCAAAACccttcacaagaaaaaaaaaatggttctttAATATAATAATCCTTTGGGAACCTCGACTCAGCGTTCTGTGTTGTTGTTGTGAAAACACTTTTGGACCGTTAACAAAATGAGACTCACTTCTGACTATTCAAGAATTCAGACATTACTCTCAGGTTCATTAAACTGTCAATTATTAACATAATTACATGTAAAAATATCAATTATGTAAATGAATTGCCTATTCTAGGAAATGTGTCAAAAATTACCCCTGTACTATATTAGTAAACATTAACTACAATCTTGTGTTTGCTAAGCAGGGATTGAGCTGGAAGCAAGTTCATTATAGATGATAAGATTCATAAATTGACAATGAATGATTAACACACACTCATGAATAGTGATCTGCTCAGTGTTTGTttagtctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtatgtgtgtgtctgctcacAGGTGGTGATATTCAGTGCCAGTGGAGGTTGCCCTGGATACATGCTAAAAGACTACATAATCTTTGCATGATAGTCTGCAAAGCACTATGAGACTCTTTATATTTCATTTCGCTGGTGTATTGAAGCAACCTGAAGTATGGAGCATTCTGTCTGGTCAATAATAGCCTATAGTGATGGTGCAACAATGACAAATCAAAAAATGACTGGAGAGGAGTTTGAAGTCCTTCAGATGGTTTTGTGTGGGAGTCGGGCGTGTGATAGTGAAAAATTGTTTTTCAGAAACCTCTGTGTGGGCTGAGCCAGAAATGACCGTCTGAGCTTCTGGGATTGCACTTGAAATCTACCTTTGTACTTTCACCACAATAAACTAGAGATTTGCAAATGAAAGCTTTGTATGGCTCAGAAACCTGTGGCACGAAAACACCCCCTCCCTTTTGTTTAGGACTAAAGCACTGCTGCTTGTGACAGATTCACTGCTCCTGCCAACCATTTTAACTTCACTTCTGCTGCATGATATTTTTAATCAGTAGGCTGTATTTAAGTGTTGTCTGTTGTTGTCTAGTGGCTTTAACTATAACACAAATTAAGAGAGCTGCAGTGCAAACAGAGCTATTGACTGTTTGCCATTCCCACCGCTCTGTTAATTAGggcaaaatttaagacctttttctCCATTATGTGTCAAATGGCAATTTGAA
>TCONS_00052734
GCAAAACTCTGCTGATAATCAAGTGGTGATATTCAGTGCCAGTGGAGGTTGCCCTGGATACATGCTAAAAGACTACATAATCTTTGCATGATAGTCTGCAAAGCACTATGAGACTCTTTATATTTCATTTCGCTGGTGTATTGAAGCAACCTGAAGTATGGAGCATTCTGTCTGGTCAATAATAGCCTATAGTGATGGTGCAACAATGACAAATCAAAAAATGACTGGAGAGGAGTTTGAAGTCCTTCAGATGGTTTTGTGTGGGAGTCGGGCGTGTGATAGTGAAAAATTGTTTTTCAGAAACCTCTGTGTGGGCTGAGCCAGAAATGACCGTCTGAGCTTCTGGGATTGCACTTGAAATCTACCTTTGTACTTTCACCACAATAAACTAGAGATTTGCAAATGAAAGCTTTGTATGGCTCAGAAACCTGTGGCACGAAAACACCCCCTCCCTTTTGTTTAGGACTAAAGCACTGCTGCTTGTGACAGATTCACTGCTCCTGCCAACCATTTTAACTTCACTTCTGCTGCATGATATTTTTAATCAGTAGGCTGTATTTAAGTGTTGTCTGTTGTTGTCTAGTGGCTTTAACTATAACACAAATTAAGAGAGCTGCAGTGCAAACAGAGCTATTGACTGTTTGCCATTCCCACCGCTCTGTTAATTAGggcaaaatttaagacctttttctCCATTATGTGTCAAATGGCAATTTGAA

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060485 mesenchyme development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052733 False 6332 lncRNA 0.34 1 34210893 34217224
TCONS_00052734 True 719 lncRNA 0.41 2 34212862 34217224

Neighbor

gene id symbol gene type direction distance location
XLOC_025529 dre-mir-181c coding upstream 13122 34197694 ~ 34197771 (+)
XLOC_025528 timm29 coding upstream 28306 34180835 ~ 34182587 (+)
XLOC_025526 carm1 coding upstream 38679 34149337 ~ 34172214 (+)
XLOC_025527 BX649502.1 coding upstream 51821 34158875 ~ 34159072 (+)
XLOC_025525 NA coding upstream 63799 34140363 ~ 34147094 (+)
XLOC_025531 slc25a23b coding downstream 2970 34220194 ~ 34230565 (+)
XLOC_025532 znf207a coding downstream 16805 34234029 ~ 34245025 (+)
XLOC_025533 NA coding downstream 31958 34249182 ~ 34250243 (+)
XLOC_025534 NA coding downstream 36333 34253557 ~ 34253946 (+)
XLOC_025535 BX470190.1 coding downstream 141991 34359215 ~ 34359332 (+)
XLOC_025429 BX649540.1 misc upstream 3961857 30248739 ~ 30249036 (+)
XLOC_025522 NA non-coding upstream 97192 34107202 ~ 34113701 (+)
XLOC_025521 BX649502.3 non-coding upstream 131723 34078200 ~ 34079170 (+)
XLOC_025538 NA non-coding downstream 515645 34732869 ~ 34733118 (+)
XLOC_025541 BX890565.1 non-coding downstream 693056 34910280 ~ 34910399 (+)

Expression


Co-expression Network