XLOC_025547


Basic Information

Item Value
gene id XLOC_025547
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35439910 ~ 35489947 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052353
ATGCTATTTCCCTGCATGCTCCCCCATTACCTggttgtttgagtgtgtgtgtcgctggagctgtgtgtgtgtctgtgaacagCCTGACTCTGATTATGTGCTGCAGCCGCTTGGAAGACTGAAAGCACACTGTGAGATGTCTGGAAGACTTCAGAAGTTCAAACTCCAGTGCACGCCTTGCAGATGAAACGCATTACACAGAGAGGTGTGAATTATTGAGACAAGGGCAGGATGGGCACATGTAAATGAGGCTCATTTGGACCAGAGCAAAGTTTTTGAATTAAGCTGTAGGAGCTTTAGGTAGAAATGCTCCCATCTAAAATATATACTGCATGCATATATGAATGACAATTGAGTGGCTCCTCCAAGCATCATTTgcatgtgatattgcatttacgTGACTGGAGTGAGACTGAAACAAGTCTAGCTGTGAAGACAGAGATTGAATCGAATAAAAGGGTAAAGATGGAAGCTCCAaaaatttatttacagtgttgATCAAATggattgaaaaaatatttgtta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052353 True 525 lncRNA 0.42 2 35439910 35489947

Neighbor

gene id symbol gene type direction distance location
XLOC_025546 rbbp6 coding upstream 18716 35406395 ~ 35421194 (+)
XLOC_025545 cacng3b coding upstream 63932 35298078 ~ 35375978 (+)
XLOC_025544 prkcbb coding upstream 173850 35005062 ~ 35266060 (+)
XLOC_025543 smarce1 coding upstream 444848 34985895 ~ 34995062 (+)
XLOC_025542 ca10b coding upstream 458237 34919810 ~ 34981673 (+)
XLOC_025548 tnrc6a coding downstream 5623 35495570 ~ 35533366 (+)
XLOC_025549 rpusd1 coding downstream 52120 35542067 ~ 35549478 (+)
XLOC_025550 NA coding downstream 77555 35567502 ~ 35570748 (+)
XLOC_025551 traf7 coding downstream 118438 35608385 ~ 35634727 (+)
XLOC_025552 BX572621.1 coding downstream 253237 35743184 ~ 35743256 (+)
XLOC_025429 BX649540.1 misc upstream 5190874 30248739 ~ 30249036 (+)
XLOC_025541 BX890565.1 non-coding upstream 529511 34910280 ~ 34910399 (+)
XLOC_025538 NA non-coding upstream 706792 34732869 ~ 34733118 (+)
XLOC_025535 BX470190.1 non-coding upstream 1080578 34359215 ~ 34359332 (+)
XLOC_025534 NA non-coding upstream 1185964 34253557 ~ 34253946 (+)
XLOC_025533 NA non-coding upstream 1189667 34249182 ~ 34250243 (+)
XLOC_025553 NA non-coding downstream 259894 35749841 ~ 35750233 (+)
XLOC_025555 NA non-coding downstream 468731 35958678 ~ 35965512 (+)
XLOC_025556 dre-mir-193a-1 non-coding downstream 469965 35959912 ~ 35960010 (+)

Expression


Co-expression Network