XLOC_025565 (rgs9a)


Basic Information

Item Value
gene id XLOC_025565
gene name rgs9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36366053 ~ 36403234 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050377
gttttctatcatattttgtatagtgAACGGAATTATTACATATCCGTACAAATGTGTCCCCCACCTTCAATCATGGAGCAGTTCAGCAGCCAAAGTTTAgtttagatttagtttttaaaagtcaaagagttcatttattattttcagtttaggaaaatatgatataaaaatagctgaataaattaaagtacaaaaggtGTACAATAGGACTTTTGGGCCCTATTGGGGCCAAATCCACCCCTGTTTAATGCTCACTGATTCTGAAAGATTAGATTCAGTGGCCCAATCTTGCCCAGCAGAGGAGTGTTTTATAGACCTTTAATCTGACTGTAACTACAACGGCAGTTTCTGATTAGGTCTAGGAACAGCGCAGATTAAATTAATCGCAGGACAGTCCCAGGAGAAACCCCAAGCAGGCGTgtcgtgagtgtgtgtgagtgtgtgtgagtgtgtgtcgcCGCCTGTCGGAGTGTGTGCGCAGTGCAGAACGGAGCTTCGTTGTGATTGGTCTGCTATCACTCTCTGATATTTACTGCTCACTGGTGTGGTACGTGCACTGTCCAGAGCTCTCAGAAAACCAACAAACTTCTTTCTTATAAGGGTTGCTGACAACTGGATTAATTTTGTActtataatatagtttttttccGGAATACAAAATGACAATAAGATCGGACCGAGACCATGGACAACATTATAGGCCACGGATGACCTGCCTTAAAAAGCTGGAGGCCATGGTGGTTCAAATGCAAGACCCATCAACTGGTGTGAAGGGATCAGATCAGAAGCTAAACGTTACTACCATTCCTCATGTCATGACGGACCAGGACATTATTGCATGGATCGCTAAACATATGAGCATGGAGAATAATGAGGCTCAAGCATTTGGCACAATGTTAGTGGCATATGGATACATCTATCCTCTGCAGGACCACAAAAAGCTCGTCCTTAAATCAGACGGCAGTTTGTATCGCTTTCAGACCCCCTATTTCTGGCCTGTGCAGAAGTGGGCCGCTGAGGACATTGACTATGCAATCTATCTGGCAAaaagaaatattagaaaaaaaggaGCGCTTGATGCTCATGAACAGGAGGAATACGACAAACTCCACAAATGGATGAACCACAAATGGGATTTTATTGTGATGCAAGCTAAAGAGCAGTACCATGCTGGGAAGGCACGTCCGAAAGCAGACAGAGTTGTGTTTGACTGTCAGGAAAGAGCATACTGGATAGTCCACAGGCCTCCACCACAAACTCACAGCGCAATGGATTATGGCCTGGATCGTCATATTGATCCTAATACAGAGGAGAAAAAAACCTTTGATTACTACAGAAGAATCaacATCTACACACAACAGGCCATCATGAGGTCAAGGGTCAAGTCTTCAGTGTCTCTCGGAGCCATGCTAAAGTATATAACAAACTTCAATAACCATGACCCGTTCCTGGTTCCCTGCCTTCCTAGCAATCCCTGGCTGACAGATAATGACGCGTACTGGGAGCTGAACACAGACGATATTGAAGTCCCCACAAAGATGAGAGTGGAGCGCTGGTCTTTCAGCTTCTACGAGCTGCTCAATGACCCACGAGGCCGTGCAGACTTCAAGGTCTTCCTGAAAAAAGAATTCAGCGGTGAGAATTTAGCTTTCTGGGAAGCTGCTGAGGAGTTAAAATTTGGCTCAGCAGCTACAatgtcagaaaaagctgaacaagTTTTCAAAACGTTTTTGGCCCCAGGAGCTCCACGCTGGATCAACATTGACGGCAGGACAATGGGTCTTACAGTAAAGGGACTGGAGCATCCTCACCGCTATGTGCTGGAGGCGGCACAGACTCACATCTTCATGCTCATGAAGAAGGATACCTTTTATCGCTACTTGAAGTCACCAGTTTATAAGGACATACAGAAAAAGGCCATTTCACCTGCACCACACAACTTCACTGAAGCGCAGCTGGAGCAGAACATGAGGAACCGACGGCCGAGCATCAGCCCCATCATCACCTACCAGAAGGAGCAGGAGGAGAAAGCAAAGGCCGCGGCCGCAGCAGGACCCGTCGACATCAAAAAACTGATGGCCAGCAAACTAGACCGCAAATAGGAGACTCGCTGCAAATACTACACCTACAATCTGACggataacaatattttttaaaagttacccAGAAATGGTTTAACAGGATAGTTTGCCATATTTGGTCATCTAGTCCGATTTTTTTTCAATCTTACGTCATTACAAAACTGTACAAGTTTCTGTTTTCTGTCGAACAAAgtagaagatattatgaagaatgttgcaaacctgtaaccattaacagtagaaaaaacaaacactctATATGTCAATGGCTatcggtttccagcattctttcaAATTTAAATATACGTGTTCAACAGAATGAAGAAACTCAGTTAGGTCTGGAAAAACAGACAGTCAGTAAATAAAGACTCTGTGGTGCTCCGCATGTACAGGTCCAGTGTAAAGTCTCATATAATAGAGCTATACACTAAATCCATACCAAGAAGATATAAAATAACTGACAGCTTTGTATATATACACGAGTGCTAAATAGCTAATTCCTATAATTATGTCCAAAGTATATTTTTGTAGTTGGctaaattacacatttattttcatgcactgattctgttcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttacactataggtctcaaactggattcctggagggccgcagctctgcacagttttgctccaaccctaatcaaacacagctgatcggaataatgaaggtgttcaagactaatAGACTATTaacaggtgtgagttggaggtggttgaagctaaactatgcagagctgcagccttcaggaattgagtttgagaccattggtttACACTATATTCAGTCTCTGTTTCCCATTATAGCGTCAGCATGTTTTGTATGTGTGCAGTAGTTACAGTAAATGCATGTatctttttactgtaaaataattaaagtCAGCATGGTGATTGATGTGTGATGGTTTATAATGGATGCATAATAGAAGATAATTAATATAGCCCTATATTTATTTACCTTGCTTTTCTATTTGAACAAACCCTCAGCTCACAGCTTTTGATTTCCACAACGTTCTGGGAATGTTATTTTATGGTTGCAAATTGAGAAGCTAAAAATGACCATTAGGGAACATtctgtttagaccaggggtgctcaaacctTTTCTTATTAAAACCAAAGTTGATTGAGGGGTAGGCCGAAGGTTAATATACCAAACTATTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATAACATCACCTATCGCCTCCAGATCCAGCAGTTCTACTCCATGAAAAACTGGGAGCATAGGTAGAAAGCCATGAAAACTAAAACACCATCTCAACTCTTTCTGTTTCGCATAATGTTTACTTTGCTTTTAAAACAGATGTAATTATGACAAATTCTATCTCATGAAATCCATGTACATTATAAGCAGCCTACCAGTGGTCTAGTGATGTCTGCTCCATGTGTGGCAGAATTAGTCTTGCGGGAGTTTGTCATACTCTGTGGCAGCAAACCAAACCTTGAGGAAAGGGAagagtttttattataatttatttaaatacagaaTTAAAATGAAAcgtaaaaattgtaaaacatttgtgcatttttaattgttttttaatatattttccaatatttttctttaaatatattatatattataaataaatgttttctaattATGCATAATATATTTTAGGTACAAAGCTACAATGAGCAAAAGGTGTTAATAAACCCAGGTTTATGTTGAGGAAAAACATTacttgcaa
>TCONS_00050378
GATATTTACTGCTCACTGGTGTGGTACGTGCACTGTCCAGAGCTCTCAGAAAACCAACAAACTTCTTTCTTATAAGGGTTGCTGACAACTGGATTAATTTTGTActtataatatagtttttttccGGAATACAAAATGACAATAAGATCGGACCGAGACCATGGACAACATTATAGGCCACGGATGACCTGCCTTAAAAAGCTGGAGGCCATGGTGGTTCAAATGCAAGACCCATCAACTGGTGTGAAGGGATCAGATCAGAAGCTAAACGTTACTACCATTCCTCATGTCATGACGGACCAGGACATTATTGCATGGATCGCTAAACATATGAGCATGGAGAATAATGAGGCTCAAGCATTTGGCACAATGTTAGTGGCATATGGATACATCTATCCTCTGCAGGACCACAAAAAGCTCGTCCTTAAATCAGACGGCAGTTTGTATCGCTTTCAGACCCCCTATTTCTGGCCTGTGCAGAAGTGGGCCGCTGAGGACATTGACTATGCAATCTATCTGGCAAaaagaaatattagaaaaaaaggaGCGCTTGATGCTCATGAACAGGAGGAATACGACAAACTCCACAAATGGATGAACCACAAATGGGATTTTATTGTGATGCAAGCTAAAGAGCAGTACCATGCTGGGAAGGCACGTCCGAAAGCAGACAGAGTTGTGTTTGACTGTCAGGAAAGAGCATACTGGATAGTCCACAGGCCTCCACCACAAACTCACAGCGCAATGGATTATGGCCTGGATCGTCATATTGATCCTAATACAGAGGAGAAAAAAACCTTTGATTACTACAGAAGAATCaacATCTACACACAACAGGCCATCATGAGGTCAAGGGTCAAGTCTTCAGTGTCTCTCGGAGCCATGCTAAAGTATATAACAAACTTCAATAACCATGACCCGTTCCTGGTTCCCTGCCTTCCTAGCAATCCCTGGCTGACAGATAATGACGCGTACTGGGAGCTGAACACAGACGATATTGAAGTCCCCACAAAGATGAGAGTGGAGCGCTGGTCTTTCAGCTTCTACGAGCTGCTCAATGACCCACGAGGCCGTGCAGACTTCAAGGTCTTCCTGAAAAAAGAATTC
>TCONS_00050379
tattatttcattATATGAATCAGCTGTTAAATGATTCAATCATCCATTTTTGCAAAGCACAAGTCATTGTTATTAAACGATtcagatcatttaaataaatacctaaaatgaatgattcactgaatcagtCATTAAGACAGAGACTTACCATAACCTACCGGCATCTGTCAATCGCTCAAAAACACTCCGAAAAAGTACTTGCTATCgaaaaaattaaaggaaaaaaGCAGATATTgagatataatttttttgtgaaaattgCACACCCCTGTTGTGTATCACTTGTGTTTTCAAGATAGCATGTAGCCGTTGTGTCTTGTGTTTTATTAGGCACATTTTTGATTGTAACATAATAGAAAGTTGCTTTCTCTTTTTCCCCCAGAAAAAAACCTTTGATTACTACAGAAGAATCaacATCTACACACAACAGGCCATCATGAGGTCAAGGGTCAAGTCTTCAGTGTCTCTCGGAGCCATGCTAAAGTATATAACAAACTTCAATAACCATGACCCGTTCCTGGTTCCCTGCCTTCCTAGCAATCCCTGGCTGACAGATAATGACGCGTACTGGGAGCTGAACACAGACGATATTGAAGTCCCCACAAAGATGAGAGTGGAGCGCTGGTCTTTCAGCTTCTACGAGCTGCTCAATGACCCACGAGGCCGTGCAGACTTCAAGGTCTTCCTGAAAAAAGAATTC

Function

symbol description
rgs9a Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9 (regulator of G protein signaling 9).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-92 Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9 (regulator of G protein signaling 9).

Ensembl:

ensembl_id ENSDARG00000037925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050377 False 3935 mRNA 0.39 17 36366053 36403234
TCONS_00050378 False 1107 mRNA 0.45 13 36366577 36383414
TCONS_00050379 True 700 lncRNA 0.39 4 36379286 36383414

Neighbor

gene id symbol gene type direction distance location
XLOC_025564 slc16a6b coding upstream 37381 36313532 ~ 36328672 (+)
XLOC_025563 zgc:86896 coding upstream 59650 36275633 ~ 36306403 (+)
XLOC_025562 dus1l coding upstream 133400 36222799 ~ 36232653 (+)
XLOC_025561 SLC16A3 coding upstream 198659 36160979 ~ 36167394 (+)
XLOC_025560 scpep1 coding upstream 227879 36127287 ~ 36138174 (+)
XLOC_025566 NA coding downstream 20768 36424002 ~ 36425833 (+)
XLOC_025567 si:dkeyp-72e1.9 coding downstream 112142 36515376 ~ 36586979 (+)
XLOC_025568 pdxdc1 coding downstream 213479 36616713 ~ 36644776 (+)
XLOC_025569 gspt1l coding downstream 242820 36646054 ~ 36664310 (+)
XLOC_025570 nde1 coding downstream 268351 36671585 ~ 36684388 (+)
XLOC_025429 BX649540.1 misc upstream 6117017 30248739 ~ 30249036 (+)
XLOC_025559 NA non-coding upstream 248306 36115306 ~ 36117747 (+)
XLOC_025558 NA non-coding upstream 342521 36017823 ~ 36023532 (+)
XLOC_025555 NA non-coding upstream 400541 35958678 ~ 35965512 (+)
XLOC_025572 NA non-coding downstream 431953 36835187 ~ 36849836 (+)
XLOC_025574 NA non-coding downstream 492198 36895432 ~ 36936135 (+)
XLOC_025579 NA non-coding downstream 1072555 37475789 ~ 37477433 (+)
XLOC_025581 NA non-coding downstream 1192107 37595341 ~ 37596530 (+)

Expression


Co-expression Network