XLOC_025564 (slc16a6b)


Basic Information

Item Value
gene id XLOC_025564
gene name slc16a6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36313532 ~ 36328672 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050376
AACAGCAGACAGCTCTCGCGCCCGCGCTCAAATACCGGCTTCAGCCGGTGTAAAATCTGCCAAGCTTCAGTGAAAGGAAACCAATAGAGAGAGCTGCTGGATAATACGTGATCCAGCTTCAATATCGGTATTAATGAATTGTTAATGAAGTCAAACATAAACTAGGTAGCGATATATTTTTGAACGGGATCCTTTGCCCGTGACTCGGTGAAGACTCACGCTCTCTCGTGACCGCGGATGCAGAAAGCAGAAGTGATGTACTTGTACTCTACTTGACACTTCAACACAGAAGACAGCCAGCGCTGTTGgcttttgttttctttcaatAACTCGTTGTCAATTCTTCTTCAACGGTTCGAAACATCAGTGTCCATCATGTCCAGCCTGAAGGGCTGCATGAGCCCCAATGTGTACTCTGAGGTGCCAGATGGAGGCTGGGGCTGGATGGTGGCTGCTGCCTTCTTCTTTGTGGAGGTTTTCACCTACGGCATCATCAAGACTTTTGGAATCTTCCTCCAGGACCTCATGACAGAATTTCATGAAACCAACAGCAGAGTTTCTTGGGCCGTGTCCATCTGCGTCTTTGTTATGGCCTTCACAGCTCCTCTTTCTACGCTGCTGAGTAACCGTTTCGGCCATCGGCCTGTGGTCATGGTTGGTGGATTCCTGATCAGCCTGGGCACAATCACAACAGCCCTCACTCAGTCCATCGATGAGATGTACATCACCATGGGCATTGTTGCAGgCCTGGGCTATTGTCTGACCTTCCTGCCTACCGTCACCATCCTGTCGCAGTATTTCAGCAAGCGCCGCTCGCTCGTCACCTCTATAGCCTCCACAGGAGAGTGTTTCTCCATGCTCGCCTTCGCACCAGCCATGAATGCCCTGAAGGAGCAGATCGGCTGGCGTTACTGCTTGATGGTGATTGGGGTCCTGCAGGCCTCCATTATTGTCTGCGGGGCTCTACTAAAGCCAATCGTCATCAAACCCAAACCCGCCACCCAGGAGGCGTCCACATCCCCCCTTAAAGTCCTCGACTCCAAATACGATGCAGAGAATGAATTCACATGCACCTCCTTTGACTCGGTGGACTCCGGTGTCCAGTCCATCTCCTCCTCACAGGTCAACCTGGCCAAAGAGCAGCAGAAGAAAGAGGAGGAAGGAGAATCGCCAGAGACGCCTCTGAAACAGAAGCAGGAGGACTCCAGTGTGTCCAGAACCAAACTTTTGGACTTCTCTGTGCTCAGAGATGCCAGCTTTAACTGCTATGCACTGTTTGGTCTGTTCGCAACACTGGGCTTCTTCGCACCACAGATCTACATCATTCAGCTGAGTGTAAGTCGAGGAGTATCTCAGAAAAGCGCCACCTACATGCTGTCCGCTATGGCCGTGGCTGAGATTGGGGGTCGTTTGTCCATGGGCTGGGTCCTCAATCGCAAGCCCATCCGCAAAATCTACATCCTGCTGATCTGCACAGTGCTGCTATGTCCGGTGCTGGTGGTCTTCACCTTCGTCTCAGAGTTTTGGGGGCTCATGTCCTGTTCTTGTTTGTACGGGTTCCTGCTGGGCACTGTGGCCTCCAGTCACATCCCCATGCTGGCTGAAGATGACGTGATCGGGATTCAGAGAATGTCATCGGCTGTCGGAGTTTACGTCTGCATTCAGAGCTTCGCAGGACTCGCAGGTCCACCTCTAGGAGGTTTTCTGGTAGACCAGACTAATAATTATGGATCTGCCTTTTACTCCTGTGCGGCTGGGATGGGAGTCGGTGCTCTGTTTCTAGGACTGGTGCGTCCAGCGAAAACTGGCCTCTGCTTTGGGAAGAGGAAGAGAAAGGACCAGCAAAGTGCAGACAGAGACGCTTCTTCACAGGGCAGTGATGACAGCCCTGCTGACTTTGTAGAAATGGACATGGAGACTGACAACAGTCCCGCAAAGAGCAAACCATGGCCAGTATGAATACAGGATCACCTGTTATCCTTCACTTGAACCATCAGATCCAAAGGCTGCCAACCACACTCCCCCATCCCAACAGGGCAAAATCCTCACAAATCAAACCTTACGTCAATTAAAGTAGTTTAATCATTCTTCAACAGCACTTATGCTGAACATCCAGTCGTAACATCCAGAATACGTTTACATCTCTTTTTTACTACTCGTTATTTATTGAAGATTCAAAGCTCCTCGTTTACCAAAGTCTCCAgccttttctatttattttattgttttaaatcgAGCATAAACCATCAAAATACTCTCAGCTTTACCATTTAAAGAAGAAACCTCACGCTGTTTTGCTGCTAACATTGAGGCCATGATGTGTATTTAGGTTTCAAAAGCCTCAATCAGAGTTGAAGATGAGACTCCATCGAGCGTTCTCTCCAGGGTCTCTTCTTTAATTATTAACTAGTTTTTGCAGATGGAAACCAAAGTCAAGATGCAGGATGTTTTCGACCAAAACACATTCCTGCATGAGACTTTACAGAGGAAAAGTCTTCCATCAAGAAAAACTGATGTTAAATAAAAGGTTTCCGTCCTCAGATGTACAGTAGGTTATCTAGTGTTTCCAATGGCTACAGAATGTCCTGTTACTGCTGTCGTTTGGAATGAGCCGTCGGTGCCTTGCAGAATCACGAAAAGCTTGTGACTTGAAGGAAGAAACTACTACAGGGGCTGTTCACTCAGAACACAGTCTGGCAGTGTTTATTTTGAcgaagcttttaaaaaatatgacaCTCGGGTGGAAAATGTTGGGAAATGGAATAAGTCTATATAGAAAACCATTTAGAAGTAACGCAgagaaacacaaaagaagataagtCCCTAAAAGGTGAATCTTTAACAATGTGGCGTAGGATTTGAAATGAATGGCGGCTGATAGTAAAGAAAAAAAGCAACTGAAATTCTGGATGGGAGGTCAATCAAATTCCTCTGCACAACAAAATGAAACTATTATAGCTCTTGTGATAGAAGTGGAATCTGAAATTCAGTTTTACACTAAAGCCTTAAAACCAATCACAAACAATTCTGTTGAGCCGGGCGTTGGGAGTTTTGTAGATCTCCCGCTAACAAATTTGCAGTTTCAGTTTTTGCGTATATTGCTCTGAATTAACATCGTGGACCAACATGATTGCAACACGTGTTTCTCCTATTGTTTTTACGTCAGGTTTAttgataaactaatttcgagaggatcacgtgctcatGACTGAACACAGCTGTTCATGCATTAGCCAAttcatgatccaccaatcagacgatttataagtcactataaataccctaagttccatatcgaAGCCATTTTTGTTTGAGGAATTCCCTCGTCCACCCCTACACCTTTCCTAGAGCTAGTTCCTttcctagtggttagcactgttgcctcacagcaagaacgtcactggttctggtccttaccaagccagccaacatttctgtgcggagtttacacattttccccatgctcacatgggttttccccgggacCACCTGTTTCTTCCAGAGACCAAAAAAatgcaacctaagttaattgactaatccaaatcggcaccatagacatgctcctagtaagtagttttatcttaagagcaatcactatctgtgcATTAGCAACTACAggaggggagttctcgagatctgcctgagctcaatctcccttcttgccttgcaaacgtgagggagccccgggctcgaggatcttatgagcttggggctctctcctgggacagcatgccaaacaagctttataattaatcatcagctaagtttgaactcttgaaatgaattgTATTCATCGAGATCAAAAATCATCACGATATCAAGAGCAacaaaatcattgttttttttaattgatgaCTTGCTTTTGTCACACTAATGAATGACTTTTTATTCCTTAagtaataaataacttgcactccGTTCTTAAACTAAGTTTTAGTACGAGTTTCTAGTATTCCGATTCTAGTTAAGTATTTGACAAAAGACAATTTCagtaacaatataaaaaaaaacttttagagtttaagagtttaaaaaaaacCCTGGACATCATTCCAGAAAGCAGACACTGCCGCTTAATGGGAAAACCAGTTTCAGATCCTGATGCAGTGCAATAGACAGTGGAAGAGCCAATCATAAGCATAGCCgtagaatgaaaaagaagaataGGGAATAAAACAAAGCAACAAGTAGCATGGAAAATTGACAGAGATATCCGTTTAGTGCATGTTACAAGCAGTGTTGTGAAAAGGCTGGCACTAAAAATGTTAAGTGGTGACAAAATGTATTTCTAAACAACAGCAGAGGGTGTTCTCTGAGAAGCAGCCCCTAATTTCCTGCAAAGATGGTGAAGTGGTGTTTATTCGTCTCTAACACTGGCTGTTTAATGCTGCTCAGAGGtggcatgaatgcatttacacaGCAGCTAAAATGGTATACTTACCAGTCTGGATATTGTGCAGCAGTCTCTGAATTATGAGCATGCAGAGAGCAGCATTAATCTGACTGTGTGAAGATGGCTGAAGATAAAAACAATAGACTGTAGgattgttctgttaaacactacATCAATGGCTGGAGAATGGAGGGTTTGATAAAAACAAGACACAGATCGAGCAACGAAATATAAGCGCAAGAGATGAGCCTGTGGGTTAATTCTGTAAGAAAAAAGTAGCACTTACTTTTTGACTTGAACTCTTATGGACCTCCTATAATGTTCTGTAAGCATGTTTCATTTGTCATATTTAAAcggtttattttgtacttttaatGATAAgacactgtgtgtgttttttccctTTGATTTATGTTATTTGTGATGTACTATAGACTCTGCCTGAGACATGCTGCACTTCTGAATAATGCATTGAGAGAATGTTTAAATGTAGAATAAACTCAGTGATTATTTGTA

Function

symbol description
slc16a6b Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A6 (solute carrier family 16 member 6).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110208-3 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A6 (solute carrier family 16 member 6).

Ensembl:

ensembl_id ENSDARG00000060246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050376 True 4909 mRNA 0.44 6 36313532 36328672

Neighbor

gene id symbol gene type direction distance location
XLOC_025563 zgc:86896 coding upstream 7129 36275633 ~ 36306403 (+)
XLOC_025562 dus1l coding upstream 80879 36222799 ~ 36232653 (+)
XLOC_025561 SLC16A3 coding upstream 146138 36160979 ~ 36167394 (+)
XLOC_025560 scpep1 coding upstream 175358 36127287 ~ 36138174 (+)
XLOC_025559 NA coding upstream 195785 36115306 ~ 36117747 (+)
XLOC_025565 rgs9a coding downstream 37381 36366053 ~ 36403234 (+)
XLOC_025566 NA coding downstream 95330 36424002 ~ 36425833 (+)
XLOC_025567 si:dkeyp-72e1.9 coding downstream 186704 36515376 ~ 36586979 (+)
XLOC_025568 pdxdc1 coding downstream 288041 36616713 ~ 36644776 (+)
XLOC_025569 gspt1l coding downstream 317382 36646054 ~ 36664310 (+)
XLOC_025429 BX649540.1 misc upstream 6064496 30248739 ~ 30249036 (+)
XLOC_025558 NA non-coding upstream 290000 36017823 ~ 36023532 (+)
XLOC_025555 NA non-coding upstream 348020 35958678 ~ 35965512 (+)
XLOC_025572 NA non-coding downstream 506515 36835187 ~ 36849836 (+)
XLOC_025574 NA non-coding downstream 566760 36895432 ~ 36936135 (+)
XLOC_025579 NA non-coding downstream 1147117 37475789 ~ 37477433 (+)
XLOC_025581 NA non-coding downstream 1266669 37595341 ~ 37596530 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06605188_06611590 SLC16A6B coding CI01000046 null 6605188 ~ 6611714 (+)