CI01000046_06605188_06611590 (SLC16A6B)


Basic Information

Item Value
gene id CI01000046_06605188_06611590
gene name SLC16A6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6605188 ~ 6611714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06605188_06611590.mRNA
ACAAACAGGTGAGATTTGAGCGCATCCACCCCGTTCACCACCGGGAAGTGCAATGCGCGTTCACGACCCTCAGTTGTACAGCAGGCAGCTGTCGCGACCGCGCTAGAATACCGGCTTCAGCCGGTATAAATTCTGCCAAGCTTCAAAGTGACTGCGGATGCTCAGGGCAGAAACGATGTTCTCTGGCTAACACTTTAACAGAAGCCAGAAGCCAGCTAGAGCTGTTGGTTTTTGTGTTCATTCAAATTTCCGAGTTTACCCCAGTTTCTTCAACGTCTCGTGGTTACATAACAAGGATTTTATGCATATGGATTTGTAGCACCTTGAAAGAAACGTCAGTGTCCATCATGACAGGATTGATGTCAGGCCTGAAGGGCTGCACGAGCCCTAATGTGTACACTGAGGTGCCAGATGGAGGCTGGGGCTGGATGGTGGCTGCCGCCTTCTTCTTCGTGGAGGTTTTCACTTATGGCATTATCAAGATTTTTGGGATTTTCCTCCAGGATCTCATGAGAGACTTTAATGAAACCAACAGCAGCGTGTCTTGGGTCATCTCTATCTGTGTCTTTGTCATGGCCTTCACAGCTCCTCTTTCCACGGTGATGAGTAACCACTTTGGCTACCGGCCTGTCGTCATGCTCGGTGGACTCCTGATTAGCCTGGGCACAATCACAACGGCCTTCACCAAATCCATCTCTGAGATGTACATCACCATGGGAATCGTTGCAGGCCTGGGCTACTGCCTTACCTTCCTGCCTACAGTCACCATCCTGTCGCAGTACTTCAGCAAGCGCCGCTCCCTCGTCACATCCATAGCCTCAACTGGAGAATGCTTCTCCCTGCTAGCCCTCGCACCAGCTCTGAATGCGCTGAAGGAGCAGATTGGCTGGCGTTACTGCTTGATCGTGATTGGGGTTATGCAGGCCTCAATCATTGTCTGTGGGGCTTTGCTGAAGCCAATAGTCATTAAACCCAAACCTGCCACACCAGAGGCTTCCCCCCTTAAAGAACCTGAATCCAAATATGACCTGGAGAATGAATTCACACATACCTCTATTGGCTCTGTGGACTCAGGGGTCCAGTCTGTCACCTCCTCCCAGATCAACCTGTCCGAGGGCCAGGAATCTACAGAGCAGGACTCTGCAGAGAAAAAAGCACTTAGGAAAAAAGAAGAAGGAGAAAACGTTGAAGACGAGCTACCAGTGCTAACGGAGACCTCAGGGGTTTCTAGGCCCAAGCTGTTGGACTTCTCTGTGCTCAGGGACGCCAGCTTCAACTGCTACGCACTGTTTGGCCTCTTCGCCACACTGGGCTTCTTCGCTCCGCAGCTCTACGTCATTGAGCTGAGCGTGAGCCGAGGCGTGTCACGTGACAGTGCCACCTACATGCTCTCGGCCATGGCCGTGGCTGAGATTCTAGGTCGTCTGTCCATGGGTTGGCTCCTCAATCACAGGCCCATTCGCAAGATCTACATTCTGCTGATTTGCACGGTGCTGCTGTGCCCGGTGCTTGTGGTCTTCACCTTTGTCACTGAGTTCTGGGGGCTCATGTCCTGCTCCTGTTTCTATGGCTTCCTGCTGGGCACCGTGGCCTCCAGCCACATCCCCATGCTGGCTGAAGATGACGTGATTGGCATTCAGAGGATGTCATCGGCTGTTGGCGTCTACGTCTGCATCCAGAGCTTTGCAGGACTGGCCGGTCCACCTCTAGGAGGTTTTCTGGTAGACAAGACTAACAATTACGGATCAGCCTTTTACTCCTGCGCGGTTGGGATGGGAGTAGGGGCTGTGTTTCTTGGACTGGTACGTCCAGCCAAATTAGGCCTCTGCCTTGGGAGAAGGAGGAATGACCAGCAAACACCAGACAGAGACTCTACCTCACAGGGAAGTGACGATGGCACTGCTGACTTTGTAGAAATGGACATGGAGAATGACAACAGTCCTGTAAAGTCCAAACCTTGGCCAGTATGAATACCGCCTCACCTCAAGAGTAAACCTACTCTTTATCCTCCACTTGAATGACCATCCCAAAGGTTGCAATACACAAATCCTGATCCAACAGGGTAAAACAGTCACAAATCAAATGTTATGTCAA

Function

symbol description
slc16a6b Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A6 (solute carrier family 16 member 6).

GO:

id name namespace
GO:0035879 plasma membrane lactate transport biological_process

KEGG:

id description
K08183 SLC16A6; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06605188_06611590.mRNA True 2094 mRNA 0.52 8 6605188 6611714

Neighbor

gene id symbol gene type direction distance location
CI01000046_06586111_06594100 CNTNAP1 coding upstream 11006 6586111 ~ 6594182 (+)
CI01000046_06553680_06556870 NA coding upstream 47463 6552326 ~ 6557725 (+)
CI01000046_06489840_06506540 TUBG1, TUBG1.L, TUBG2 coding upstream 97581 6489620 ~ 6507607 (+)
CI01000046_06465424_06470835 SCPEP1 coding upstream 134194 6465424 ~ 6470994 (+)
CI01000046_06362326_06364947 NA coding upstream 240104 6361790 ~ 6371457 (+)
CI01000046_06617493_06617792 NA coding downstream 5779 6617493 ~ 6618531 (+)
CI01000046_06653842_06661599 NA coding downstream 42128 6653842 ~ 6661648 (+)
CI01000046_06754054_06769901 NA coding downstream 142340 6754054 ~ 6770272 (+)
CI01000046_06794525_06807060 PDXDC1 coding downstream 182811 6794525 ~ 6807152 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L coding downstream 196793 6808507 ~ 6821543 (+)
G197827 NA non-coding upstream 29391 6575529 ~ 6575797 (+)
G197826 NA non-coding upstream 30415 6574564 ~ 6574773 (+)
G197824 NA non-coding upstream 33638 6571335 ~ 6571550 (+)
G197822 NA non-coding upstream 35321 6569600 ~ 6569867 (+)
G197721 NA non-coding upstream 122190 6482106 ~ 6482998 (+)
G197755 NA non-coding downstream 61946 6673660 ~ 6675496 (+)
G197875 NA non-coding downstream 174204 6785918 ~ 6786281 (+)
G197881 NA non-coding downstream 213284 6824998 ~ 6825219 (+)
G197885 NA non-coding downstream 229121 6840835 ~ 6841264 (+)
G197888 NA non-coding downstream 251536 6863250 ~ 6881231 (+)
G197528 NA other upstream 862504 5726121 ~ 5742684 (+)
G197352 NA other upstream 1328735 5259318 ~ 5276453 (+)
G196869 NA other upstream 2183501 4415530 ~ 4421687 (+)
G197121 NA other upstream 2233758 4371011 ~ 4371430 (+)
G197055 NA other upstream 2455408 4149423 ~ 4149780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025564 slc16a6b coding NC_007114.7 CM002887.2 36313532 ~ 36328672 (+)