XLOC_025577 (psmc3ip)


Basic Information

Item Value
gene id XLOC_025577
gene name psmc3ip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37112693 ~ 37135569 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050401
GCGCGAAAGCTGAGCTGACTGAAGTAAATAATCCAAGAGGAAGAAGAACACTGAGGTACATTAGACGACAGAAGTGTTCAGATCATTGACATATCCTGACAGAATAAACGATGAGCAAAAAAGACAGTGCGGCAGTCGCACAGATCCTCGCTTACTTGAATGAGAAAAACAGACCCTTCAGCGCTCAGGATGTCTTTACCAACCTACAGAAGCAGTGTGGACTGGGGAAAACgGCAGTGGTCAAAGCAGTGGAGCAGCTGGCCCAGGAAGGCAAGATTAAAGAGAAAGTCTACGGAAAGCAGAAGATCTACTTTGCAGATCAGTCTCAGTTTGAAGATGTGAGTGACGCTGACCTTAGGAAGATGGATGATCGTATTGGGGAAATCAATACAGAAGTACAGAGCATTTCACAGAGCTGCCGGCAGCTGGATACAGAGCTAAAGGAGTTAAACAGCTCATTAACCACGGCAGAGATGAAGGCACAGATCCAGGAGCTGCAGGCAGAGATTTCTGGGTACAGAGAGCGGCTGGAGAACATCAAATCAGCTACAAATCATGTGACCCCTGAGGAGAGGGAGAAGGTTTACAAGGAGAGAGAGACTTATGTAAAAGagtggaggaagaggaagagactGGTTTCCGATATGATGGGAGCTATTTTGGAGGGTTACCCAAAGAGCAAAAAACACTTCTTGGAGGAGGCTGGGATTGAAACAGACGAGGACCATAAAGTGACAATGCCCAACATCTGACGAAAAGGCAAGCTGATTAATTCTGATGCTGCCAGGAAACCTGACCTTTAGAAATGTCACAAAGTAATGCATTCTGGGACAGTAAAAGAACAGTTCTATTGAAAACCAACTctatttataattcttattttgGGAACAAACCACCAGGCTGTAAATAAGTTTGAACAttctttatttttcaattaaaaaatgatACAGATACAAAAATA
>TCONS_00050402
GAGGTACATTAGACGACAGAAGTGTTCAGATCATTGACATATCCTGACAGAATAAACGATGAGCAAAAAAGACAGTGCGGCAGTCGCACAGATCCTCGCTTACTTGAATGAGAAAAACAGACCCTTCAGCGCTCAGGATGTCTTTACCAACCTACAGAAGCAGTGTGGACTGGGGAAAACgGCAGTGGTCAAAGCAGTGGAGCAGCTGGCCCAGGAAGGCAAGATTAAAGAGAAAGTCTACGGAAAGCAGAAGATCTACTTTGCAGATCAGTCTCAGTTTGAAGATGTGAGTGACGCTGACCTTAGGAAGATGGATGATCGTATTGGGGAAATCAATACAGAAGTACAGAGCATTTCACAGAGCTGCCGGCAGCTGGATACAGGTTTACAAGGAGAGAGAGACTTATGTAAAAGagtggaggaagaggaagagactGGTTTCCGATATGATGGGAGCTATTTTGGAGGGTTACCCAAAGAGCAAAAAACACTTCTTGGAGGAGGCTGGGATTGAAACAGACGAGGACCATAAAGTGACAATGCCCAACATCTGACGAAAAGG
>TCONS_00050403
GAGGTACATTAGACGACAGAAGTGTTCAGATCATTGACATATCCTGACAGAATAAACGATGAGCAAAAAAGACAGTGCGGCAGTCGCACAGATCCTCGCTTACTTGAATGAGAAAAACAGACCCTTCAGCGCTCAGGATGTCTTTACCAACCTACAGAAGCAGTGTGGACTGGGGAAAACgGCAGTGGTCAAAGCAGTGGAGCAGCTGGCCCAGGAAGGCAAGATTAAAGAGAAAGTCTACGGAAAGCAGAAGATCTACTTTGCAGATCAGTCTCAGTTTGAAGATGTGAGTGACGCTGACCTTAGGAAGATGGATGATCGTATTGGGGAAATCAATACAGAAGTACAGAGCATTTCACAGAGCTGCCGGCAGCTGGATACAGGTTTACAAGGAGAGAGAGACTTATGTAAAAGagtggaggaagaggaagagactGGAGGAGGCTGGGATTGAAACAGACGAGGACCATAAAGTGACAATGCCCAACATCTGACGAAAAGGCAAGCTGATTAATTCTGATGCTGCCAGGAAACCTGACCTTTAG

Function

symbol description
psmc3ip Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 3. Orthologous to human PSMC3IP (PSMC3 interacting protein).

GO:

id name namespace
GO:0007131 reciprocal meiotic recombination biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040625-125 Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 3. Orthologous to human PSMC3IP (PSMC3 interacting protein).

Ensembl:

ensembl_id ENSDARG00000037892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050401 False 961 mRNA 0.43 8 37112693 37135569
TCONS_00050402 False 562 mRNA 0.46 7 37112745 37135368
TCONS_00050403 True 545 mRNA 0.46 6 37112745 37135411

Neighbor

gene id symbol gene type direction distance location
XLOC_025576 retreg3 coding upstream 4820 37083765 ~ 37107873 (+)
XLOC_025575 PLEKHH3 coding upstream 57642 36972298 ~ 37055051 (+)
XLOC_025574 NA coding upstream 176558 36895432 ~ 36936135 (+)
XLOC_025573 ezh1 coding upstream 220042 36859701 ~ 36892651 (+)
XLOC_025572 NA coding upstream 262857 36835187 ~ 36849836 (+)
XLOC_025578 fmnl1a coding downstream 60689 37196258 ~ 37235300 (+)
XLOC_025579 NA coding downstream 340220 37475789 ~ 37477433 (+)
XLOC_025580 wnt9b coding downstream 439316 37574885 ~ 37581620 (+)
XLOC_025581 NA coding downstream 459772 37595341 ~ 37596530 (+)
XLOC_025582 NA coding downstream 461160 37596729 ~ 37627885 (+)
XLOC_025429 BX649540.1 misc upstream 6863657 30248739 ~ 30249036 (+)
XLOC_025566 NA non-coding upstream 686860 36424002 ~ 36425833 (+)
XLOC_025559 NA non-coding upstream 994946 36115306 ~ 36117747 (+)
XLOC_025558 NA non-coding upstream 1089161 36017823 ~ 36023532 (+)
XLOC_025583 NA non-coding downstream 463698 37599267 ~ 37616357 (+)
XLOC_025586 NA non-coding downstream 615567 37751136 ~ 37754962 (+)

Expression


Co-expression Network