XLOC_025575 (PLEKHH3)


Basic Information

Item Value
gene id XLOC_025575
gene name PLEKHH3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36972298 ~ 37055051 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050398
TCAGAAACGCAACAGAAGCCGATAAGACGCGTTTGTTTTATCAGCTCCCCGTTTGAAGGCACCCGTGGGATGAAACTATTTTATCAGCACTTTTTTGAAGTCGGAGACGTATAAGGAGATAACCCGCGATATTTGTCAGCCGAAATTGAGGAGTTTGTTTTTCATGGATCAGCCCGTTTCATGCGACTAGACATCCTCCATCTGTCCGATCTGCACGACAGCTCCGGGACGGCGGTGGACATCACTGGACGTTTACGGATAAAGACTGGACGACACGCTGTGATTTGAATGCCTTTGCCGGGACTTTGCTGGCTTGTGTGCTGCAGACAAGGCTTCAGTTTGCTGGCTCGGGATCATGGGGAGAAAGAAGAGGAAGAGTCTTTCGAGTTACGCAATCaggacgaacacacacacacgggacgGGGGCAACTAGAGGTCACTCTGTCTCAGCCCACTCGATCAGCCAACGGCACTCCTTGTCTGTCGGGAGTTCCTGAGGAGAAAAGAAGTCTGATCACACAGAAGACTAAGATGACGATGGATGAAGACCCTGAGGTGGTCGTAAAGGGCTGGCTCCTGCGGGAGGTGCAGGGAGGTTGGCTTCGGCAGAGGAGGTTCTGGTTTGTGTTAACGTCCGATTCTCTTGACTACTACAGCGGCCCGGACAGAGATGCTCGGAGACTGGGAACGCTTGTACTCACATCGCTCTGTTCAGTGCTGTGGCCTGATAAACACACCTATAAACAGACAGgtTACTGGAGTCTGACTGTATATGGCCGCAAGCACTGCTACAGATTATTCACAAAGCACTACAATGAGGCGGTGCACTGGGCGTGTGCCGTGCAGAAAGTCATCGACAGCAAAGCGCCGGTGGAGACGCCAACACAGCTCCTCATACGTGACATTGAGgaGAATAAATTCAATCCAGAGGTTGTGGAGCACATTTATCAACATAATCCCATCCTGAGGTACACGCAGAGCCCACTGTACGCCCCACTGCTGCCTTTCCCCTACGGCAGCCTGCATCACACACACATGGCCAGCAAAGGCTACACATCGATCCGCGAGGAGGCGGTGAGGCTGTTTAACTGTCTCCAGCAGCTGGAATCAGCCCGTGAGCCCATTCCTCTCATTCAAGGGATTCTGCAGACCTGCCTGGACCTCCGACCGCTCCGAGACGAGCTCTACTGTCAGCTCATCAAGCAGACCAGCACCACCAGCTCACGAGTGCAGACGCAGACAAACCCCAACCCACAGCTCAGATATTGGCAACTGCTCACCTGCATGAGCTGCACCTTCCTGCCAAGCTGCGGCATCCTCAGATACCTGCGCTTCCACCTCAAGAGGGTTCAGAGTTTGAGTGTGGACCCAGAAGTGGAGAGCTATGCGTCCTTCATTGGCCAGGCTCTAGAGAAGACCCGAGGCAGAGAGTGTGTGCCCTCGTGGGAGGAGATTCAAGGGCTGATGGGAAGACAGGAGATACTGTGTACTGTGCATTACCCTGGACCAGGCTGCTGCCAGATACCCATCACCTCACACACCACAGCTAATGAGGTGGTGAGGAAGATGGCGGAGCGCCTCGGGCTGCAGGACAGCCGAAACACGTTTGGTCTTTTTGAGCAGAATGCATGCTGGGAAAAAGCTATAGGAGGCAGCACAATAATCGCTGATGTCATCACCAGATTTGAAAATTTGTCAGCTAAAGATCCAGACTCTGACTGCCAGTGCAGACTCTGCTTTAAACTCTACTGTCTGCTGGACACAGAAAACATCAGTACAGACAGCATTGAGTACCTCTTCCTCTATGAGCAGTGTCATGAGATGGTGGTGCGAGGGCAGCTGCCAGCTTGTGAGGAAGATCTTCTTTCACTGGCGGCGCTGAGGCTGCAGTATCTGCTGGGGGATTTCAGCGCCCTCTCTCCGTACCCGGCGCTAGAGCAGCTCTTTCCAGCAGAGGTGGTGGAGGCCCGAGCCCTGCTGGCCCCCGTCGATCCCCCCGGCTGCCCGTCCTTCCCTGGGGGTCTGCTGGCTGGGACGCTGTGGGGGCACAAGCGACGACAGGAACAGGACcaaaggctgcgggccaggctgagGGAGGAGGGGGCTGTGGTGATGTCCACTATTCTAGAGCGCTGGAAAGCCCTGGTGGGATACAGTGGCAGGGACAGCATGGCTGCTTATCTTACCATTGCCCGGCAATGGTCAGGGTTCGGCTGCACACTCTATGAAGTGGACTTTTATATAAGCTCAACAGGAAGCTTCTCTCAGAAGTTGTGGCTGGGTGTAGCGGCATCCTGCGTGACTCTGTATCGTCAGGGCGAGGCTGAAGCGCTGGAGTCTCTGCCCATCACTCAGATCTGCTCATATGGAGTGTCTGATAGCAACACGTTCAGGATCACTGCAGGAGATCGAGACCTGCTCTTTGAGACCACCAAGctgaCTGAGATCATGCAGTTGATGAATGCTTACTTCAGTGCCACTCGTCGCCAGCTAGGCAAAGATGACTGCATCTCCCTCGAAACGAACCCCAAACTCCACCCGTCTCTATTTGAGCTGCCATCTCACCCGGTGTGAAGAGTGAacgacacacactcacacacatgcacacacacatatatatgcagTCCTGGCTGTTTGCATCCCTGTAAAGAGCTTCGCTGAGAACTCAGATGAGACTGAAAGGAGCAGATGCTGTGGAAATGGAGGGAGTCAGGAGAGCCACAAACAGGAGAGCAGCTTCAGGAACTCAATTGCTACACCGCCAACAGAATCCCAAAAAGGACACAGGGGGCCTCAGCAGTCCCCTGCCATCTGGGAGCCCGTCAAATGTCACCGAGAGGAATGTAAGAGCGAGTCCAGAAATGGAAGGTGCGAAAAACATCATATTTGTTTAAAGGGATGGCTCACTCAAGAATGAACATGCTGTCATTGTTTGCTCGCTGTACAAGTTTTTGCAGAGCTGTATGAATTTTGGATTTCTGCTGTATGccgaagaagatattttgaagaatgtggatAAGCAGTGTTTTGTACAGGGAATTCTTTATAATTTGGCCTCTAAGTTGTTCCAAACTTGTTCTGACTTTTTTGTAGAACACAAAATAAGTCTTTAATCTATTCaattacagcaggggtgtccaaactcggtcctggagggccgatgtcctgcagattttagctccaactttccctTAGCACACCTGCAAAATGTTTCTAGAAAtcctaataagagcttgattagttggcccaggtgtgtctgattggggttggaactaaactttgcaggacacacggcccccaggaccaagtttgagcacccctgaatTAAAGTTAATGGGGTAAACAGTTTTTTGgaccctattgacttccattgcaggGGAAATAAATTTGggatgttttttattgttattggcaAGGTGAAAAAGTCATTTAGGTTTGGTGTCATTGGTATCGACCAGACACTGACTTGGTGCCAAAATTCATCGGAATATCTTCTATCATCTTCTTCAGTAAAGTTCATACAGTTTTAAGTTAAACGATTACAGaatttcacttttgggtgaactattcaacctgtatgtttgaaatatttgcttaaattctttaaaacaacACGAATTGTCATTTACTTTATTTGAAAATTATAAATGCATTTCATTTTGTGAAATTTGTGAAACACAGagtataattttaataacttttcaAGGAGTTTACcttaaattaaagggatagttcacccaaaacaaaaaTTTACTTGCCGTTTCATGTTATCTGAAACCTGTTGGAGTTTCtattttgtgttgaacacaaatgaaaacattCAGAAGACATTGACGTCCACAGTAGGCCAAAAAAAACCTTATGAAGGTCAGTGTCTACCGTTTTCCAACATTATTCCAAatagcttattttgtgttcaacacatgaaagaaactcaaacaagttatGGGGAAGTAAATCATGCactagaaaaaacaaaaaaaaaaaagctttttttacctagagtttttgtcttgtttctagtccccAAAAAAATTCAGAAATCAAGAagtttctagacaagcaaaacatattgtctaaTTTTTGGAACTAATATGCAAAAATTacatgagtttttccttaaaaaaaaaagctaaataatccgtcaatggggtaagcaaaataatcttatgtcgaaagcaaaaacaagattattttgcttgttttaaagaaaaactcacttcattttggcatattaattCTTTAAACAAGACTATATGCTTtgttgtctagaaaatgcttcttgatttaagaatttttagatatttggactagaaacctgacaaaaactctaagtaagaaaagcatgttttgCAGTGTGACAGTGTGGCAGTGTGACAGGCAGTGTGtggttatttttgagtgaactgtccctttaagcactTTTTTCTTACCTTCTTCAAGTGTAAATGTATCCATTTTTCTAAAGATGTTTATATGTTTTGGCAAACAAGAAAAGTTTTATATTTAGGCGACACAAACCATCTTCCATTGTGCACGCTCATACACACTCACTTTGCTTCGTCGTACTTTTCAACCTCCTGCCCAGCTCACCATAAACCCATTCATCAATCCGTACATGACCTTGAAACAAAAACTGGTGCAAATCATGCCGTCCTTGAGAACTGGCCAATACTGAACTGATGgtggcgcgtgtgtgtgtgtgtgtggtcgcgAGAGACTTTTAAAGCTGTAGAAACCAAAGGATCTTTAGCACATCGTATGATGTGAGTGTATTTGTGAAATGCTTTGAGCCCGACCTGGTGCTGCTTGACTGCTGTTAGCCTACAGTTCCTCTGATGTGCGCGTCCTGTAGCCTCAGATCTTTAGATTCAGTTAAAAACAACTAACTTAGACGCCCCATTGCAGCCTGGTACCTGTGAAGGTAAATAACATTTTCcagaaaaaagaagaagatcATTTTGGTTAAACTAAGCCTCTTGAACACATTAAACACTGAAGATAGACAAATAATCAACACTATTGATATGCAAAGTTGCTACGCCAGCTTCTAAAGATTACATTtccattaaagggacagttcatgcaAGAAATAACAACATTGTCATCATTTAACTggaggttgttttttttttttctccacataaTGAATTTCAATGGGGTCCAATTTTGTTTGGACCCCTTTGACTTGCATTGCATGGACAAAATACCTTCTTTTAAATTCTACATATGAAAATCTGTCTGGTTTGGGAAGACACACGGATGAGGAAATGATGTCAGAGTTGTCATTTCTTGTGGGGTGAATGATCCCTTTAAGCCTAACCCGTAGCCTCCGTCTGCTTTTGTTATAAAGCTTCCACGACTAACGGCTCATTGTCTTTTTATCTGCTGAGAGTTCATATTGTCCTCCTTTAACGTGTTATTTTCTGTTCGTTTATTTATGGCTGTCCGTTGTAAACATTGTgtgtaaggttttttttaattgtcctcTTTACGTTTGTTTTCTATATCTTTCATAAAGAcctgtatttgtattttagtgCTTGCATCGAAAGAGCTGATGACGTCAGTTCAAATATGCTTATTTACGGTTTTCGTTTATTTCCCCCATCACAAAAGCTCTACAAATGGTTTCCTTTGTAGATTACTGCGATGTTTGTCAACCCAAAAATGTCATTCGTCCCTTTTAAAGTCACACGGACCAAATATTTAGGGGGTTGGTGTCCCTTGTTCGCCCCTTCGAATGACTGCCAAACTGTCACTGAAGCAATAAAGCCTGCCCAGATTGGTCCTCTATGGGGCATCAGGTTGCCTTTAGAGGAGCCACTAGTGCCTGTCAAACAAACTGTACAATCTTTAACTCACTCATAATCAGGCTCACTGTATTCAGAGTATTTTAATTTCACCGCTATCTTTATTCTATCGCAGCTTGTCTGCTCGAATACAAATCCGACCAGCTACTTGAAGTCAAAAGGTGGAGGGCAATCACTTCTTCAGTGTGGTTTCTTTTTGTGTTTGGGCTATTGCCCCTGTGACGGCAGTAGTGCTCTTGTGTTTTGCGTCACTCTTTAGCTGCAGGCAGCTCCGCTCACTGTCATACATGTAAACTCCAACGACAACCTCTGATGCTTTATAGACCGTTTGTATGCTGCATGGTACCTTTATTATGTTACACATGTAATAGTCAATTGCACTATTGTTTGTACAGCTAACTTAAATGTGCAATAATGCAAAAGGATGAATACTGTATGTAATAAAAAGCAGCACCATTGCAATATC
>TCONS_00050399
ATGCCTTTGCCGGGACTTTGCTGGCTTGTGTGCTGCAGACAAGGCTTCAGTTTGCTGGCTCGGGATCATGGGGAGAAAGAAGAGGAAGAGTCTTTCGAGTTACGCAATCaggacgaacacacacacacgggacgGGGGCAACTAGAGGTCACTCTGTCTCAGCCCACTCGATCAGCCAACGGCACTCCTTGTCTGTCGGGAGTTCCTGAGGAGAAAAGAAGTCTGATCACACAGAAGACTAAGATGACGATGGATGAAGACCCTGAGGTGGTCGTAAAGGGCTGGCTCCTGCGGGAGGTGCAGGGAGGTTGGCTTCGGCAGAGGAGGTTCTGGTTTGTGTTAACGTCCGATTCTCTTGACTACTACAGCGGCCCGGACAGAGATGCTCGGAGACTGGGAACGCTTGTACTCACATCGCTCTGTTCAGTGCTGTGGCCTGATAAACACACCTATAAACAGACAGgtTACTGGAGTCTGACTGTATATGGCCGCAAGCACTGCTACAGATTATTCACAAAGCACTACAATGAGGCGGTGCACTGGGCGTGTGCCGTGCAGAAAGTCATCGACAGCAAAGCGCCGGTGGAGACGCCAACACAGCTCCTCATACGTGACATTGAGgaGAATAAATTCAATCCAGAGGTTGTGGAGCACATTTATCAACATAATCCCATCCTGAGGTACACGCAGAGCCCACTGTACGCCCCACTGCTGCCTTTCCCCTACGGCAGCCTGCATCACACACACATGGCCAGCAAAGGCTACACATCGATCCGCGAGGAGGCGGTGAGGCTGTTTAACTGTCTCCAGCAGCTGGAATCAGCCCGTGAGCCCATTCCTCTCATTCAAGGGATTCTGCAGACCTGCCTGGACCTCCGACCGCTCCGAGACGAGCTCTACTGTCAGCTCATCAAGCAGACCAGCACCACCAGCTCACGAGTGCAGACGCAGACAAACCCCAACCCACAGCTCAGATATTGGCAACTGCTCACCTGCATGAGCTGCACCTTCCTGCCAAGCTGCGGCATCCTCAGATACCTGCGCTTCCACCTCAAGAGGGTTCAGAGTTTGAGTGTGGACCCAGAAGTGGAGAGCTATGCGTCCTTCATTGGCCAGGCTCTAGAGAAGACCCGAGGCAGAGAGTGTGTGCCCTCGTGGGAGGAGATTCAAGGGCTGATGGGAAGACAGGAGATACTGTGTACTGTGCATTACCCTGGACCAGGCTGCTGCCAGATACCCATCACCTCACACACCACAGCTAATGAGGTGGTGAGGAAGATGGCGGAGCGCCTCGGGCTGCAGGACAGCCGAAACACGTTTGGTCTTTTTGAGCAGAATGCATGCTGGGAAAAAGCTATAGGAGGCAGCACAATAATCGCTGATGTCATCACCAGATTTGAAAATTTGTCAGCTAAAGATCCAGACTCTGACTGCCAGTGCAGACTCTGCTTTAAACTCTACTGTCTGCTGGACACAGAAAACATCAGTACAGACAGCATTGAGTACCTCTTCCTCTATGAGCAGTGTCATGAGATGGTGGTGCGAGGGCAGCTGCCAGCTTGTGAGGAAGATCTTCTTTCACTGGCGGCGCTGAGGCTGCAGTATCTGCTGGGGGATTTCAGCGCCCTCTCTCCGTACCCGGCGCTAGAGCAGCTCTTTCCAGCAGAGGTGGTGGAGGCCCGAGCCCTGCTGGCCCCCGTCGATCCCCCCGGCTGCCCGTCCTTCCCTGGGGGTCTGCTGGCTGGGACGCTGTGGGGGCACAAGCGACGACAGGAACAGGACcaaaggctgcgggccaggctgagGGAGGAGGGGGCTGTGGTGATGTCCACTATTCTAGAGCGCTGGAAAGCCCTGGTGGGATACAGTGGCAGGGACAGCATGGCTGCTTATCTTACCATTGCCCGGCAATGGTCAGGGTTCGGCTGCACACTCTATGAAGTGGACTTTTATATAGTAAGTTGGCAAACTTTTGgaataattaattttttgtatttgaaaaaattactttattttcacCAAAGGTGCATTAAACATGTGGTATATAcataa

Function

symbol description
plekhh3 Predicted to be involved in signal transduction. Located in extracellular space.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000070174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050398 False 6279 mRNA 0.45 13 36972298 37055051
TCONS_00050399 True 2052 mRNA 0.54 11 36972586 37044634

Neighbor

gene id symbol gene type direction distance location
XLOC_025574 NA coding upstream 36163 36895432 ~ 36936135 (+)
XLOC_025573 ezh1 coding upstream 79647 36859701 ~ 36892651 (+)
XLOC_025572 NA coding upstream 122462 36835187 ~ 36849836 (+)
XLOC_025571 abcc1 coding upstream 228336 36713477 ~ 36743962 (+)
XLOC_025570 nde1 coding upstream 287910 36671585 ~ 36684388 (+)
XLOC_025576 retreg3 coding downstream 28714 37083765 ~ 37107873 (+)
XLOC_025577 psmc3ip coding downstream 57642 37112693 ~ 37135569 (+)
XLOC_025578 fmnl1a coding downstream 141207 37196258 ~ 37235300 (+)
XLOC_025579 NA coding downstream 420738 37475789 ~ 37477433 (+)
XLOC_025580 wnt9b coding downstream 519834 37574885 ~ 37581620 (+)
XLOC_025429 BX649540.1 misc upstream 6723262 30248739 ~ 30249036 (+)
XLOC_025566 NA non-coding upstream 546465 36424002 ~ 36425833 (+)
XLOC_025559 NA non-coding upstream 854551 36115306 ~ 36117747 (+)
XLOC_025558 NA non-coding upstream 948766 36017823 ~ 36023532 (+)
XLOC_025581 NA non-coding downstream 540290 37595341 ~ 37596530 (+)
XLOC_025582 NA non-coding downstream 541678 37596729 ~ 37627885 (+)
XLOC_025583 NA non-coding downstream 544216 37599267 ~ 37616357 (+)
XLOC_025586 NA non-coding downstream 696085 37751136 ~ 37754962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016849 NA coding CM030122.1 CM030122.1 32304650 ~ 32325161 (-)