XLOC_025702 (hs3st3b1a)


Basic Information

Item Value
gene id XLOC_025702
gene name hs3st3b1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48842918 ~ 48869632 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050568
ttttttacgaaTTAAATGTAGCCATCTggtcatcaaataaataaaaacaacaacaacaataaaaaaattatgcatgcaatttctttcatttttaaaactaaatccaTTTTTGAGAGttttgataaaaataattaaatcataagtaaataatgcatataataataataatattattaataataataataacaaagaatAACTAAATAGTGCTTCAGAACTTGACTCTGTGCTCTCATTGGTCAACCCCGCTGCTAATCACACGCCCCTTTCCTTTAAATACCGCTCATGGCCCGTCGTTCACTCAGATGTCTAGAGAGCCAGAGAGAGAGACGATGGAGTGATGCGCAAAAAAGACGCGCTCGTGACTTCCTACGTCTCCGGCACTGTCCAAACGCCAAAATGAAATGAATACATTTCCCGGGGACCCATGCCCTCATCTTCCCCGTCCCGCGGAGATGCCTTCACGTTGCAGGGACTTCTGCGGAGGAACTCATAACTTTGGCAATATGTTTCATTGGACACTGCGCACAGGAGAGCCCTATGGAATATAGCGCGCACTTTCACTCTGCTCAGCCGGTGAAAAACAAACTTTTCGTCTTCTGCATCATGCTCTCGCTGTGGGTGTACATGCTGTACTGCTGCGTGGGCTACTGCTCCACCACGCCGACGTTTATGATGGACGAGAGGAGCAATAGGAGAGCGCTCCAAAGACAAGACCCGGAGATGCTCCTTAAAAGCCAGTCCAGGGACCTGCTAAACAACGATAGCGATGCCGACAGCAGAGGAGATGGCTGGGAGGAAAACAAGGGCGATGCCGCTTATGACGAGGATGACTCGGGGATAGCAGGTGCCGTGAACGGGTCCGAGAGCAAAAAGTTGCCCCAAGCGATAATAATCGGGGTGAAGAAGGGAGGGACGCGCGCGCTGCTCGAGTTTCTGCGCCTGCATCCTGATATCCGCGCTGTGGGAGCGGAGCCGCACTTTTTTGACCGCAACTACGAGAAGGGACTCGAGTGGTACAGGGAACTAATGCCCAAAACGCTGGACGGTCAGCTGACTATGGAGAAAACCCCCAGCTACTTTGTAACCAAGGAGGTTCCAGGCCGGATCCACGCCATGTCCAGAGACACCAAACTGATAGTCGTGGTGCGAGACCCAGTAACCCGAGCCATCTCAGACTACACGCAGACCCGCTCCAAAAAACCGGACATCCCATCCTTCGAGAGCTTGACTTTTAAAAACCTCAGCACTAATGTAATCGACACATCGTGGAGTGCGGTGCAGATCGGCATGTACGCTAGACACCTGGAGCGGTGGCTGCAGTTTTTCCCCATGAGCCAGCTGCTGTTTGTGAGTGGCGAGCGGCTGATTAGTGATCCATCCGGAGAGATGGCTCGAGTACAGCACTTTTTGGGCCTAAGGAGGGAGGTGACGCACAAACACTTTCACTTTAACCCTGCTAAGGGCTTCCCGTGCCTCAAAAGACCCGAAAGCAACAGCAAACCGCACTGTCTGGGCAAAACTAAAGGGCGCACTCATCCCAACATTAACCCTGAGGTGATTCAAAGACTGAGGGACTTTTACAAGCCATTTAACAAGAAGTTCTACCACATGACCGGCCATGATTTCGGCTGGgactga

Function

symbol description
hs3st3b1a Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including lateral plate mesoderm; nervous system; neural rod; pectoral fin bud; and pronephric duct. Orthologous to human HS3ST3B1 (heparan sulfate-glucosamine 3-sulfotransferase 3B1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008467 [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070202-4 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including lateral plate mesoderm; nervous system; neural rod; pectoral fin bud; and pronephric duct. Orthologous to human HS3ST3B1 (heparan sulfate-glucosamine 3-sulfotransferase 3B1).

Ensembl:

ensembl_id ENSDARG00000099149

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050568 True 1641 mRNA 0.49 2 48842918 48869632

Neighbor

gene id symbol gene type direction distance location
XLOC_025701 NA coding upstream 213147 48618161 ~ 48629771 (+)
XLOC_025700 slc16a5b coding upstream 264460 48561112 ~ 48578458 (+)
XLOC_025699 metrnla coding upstream 353031 48473346 ~ 48489887 (+)
XLOC_025698 NA coding upstream 375361 48464839 ~ 48467557 (+)
XLOC_025697 NA coding upstream 400022 48439066 ~ 48442896 (+)
XLOC_025703 NA coding downstream 24835 48894467 ~ 48907830 (+)
XLOC_025704 NA coding downstream 129259 48998891 ~ 49006665 (+)
XLOC_025705 zgc:163083 coding downstream 151447 49021079 ~ 49024570 (+)
XLOC_025706 zgc:92161 coding downstream 174285 49043917 ~ 49058326 (+)
XLOC_025707 zgc:112146 coding downstream 204376 49074008 ~ 49079318 (+)
XLOC_025429 BX649540.1 misc upstream 18593882 30248739 ~ 30249036 (+)
XLOC_025693 NA non-coding upstream 801005 48040338 ~ 48041913 (+)
XLOC_025691 NA non-coding upstream 1344575 47494522 ~ 47498343 (+)
XLOC_025709 BX649515.1 non-coding downstream 262709 49132341 ~ 49132477 (+)
XLOC_025710 NA non-coding downstream 264750 49134382 ~ 49134743 (+)
XLOC_025712 NA non-coding downstream 586130 49455762 ~ 49459924 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000033_01208922_01226195 HS3ST3A1, HS3ST3B1B, HS3ST3B1, HS3ST3B1A coding CI01000033 null 1208631 ~ 1226246 (+)