XLOC_025706 (zgc:92161)


Basic Information

Item Value
gene id XLOC_025706
gene name zgc:92161
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49043917 ~ 49058326 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050570
GCACCACTATTACATAACGTTACACTGGAAGTTGAGTTCAGTTGGCTGCGCATGCAAAGAAACTTTTTAACAAACAGAAGCAGACTGACTAAACATGGCAGAAGTGAAAGCAAGCAATATCTTGATCACAGGAGCCAACCGGGGCTTGGGCTTAGAAATGGTGAAGCAGCTTTCTGAGAATTCTTGTCCAAATCAGCATGTTTTTGCTACGTGCCGTGACCCAGAGGGACCAAGGTCTGAGGCACTGAGAGAACTGGCAAAAAAGTATCCAAGTGTAATCACTATCATACGTCTTGACGCTGATGATCCATGCAGTATCAAGGAGTCTGCCAAAAAAGTGGGTGCTTTACTCGGAGCAAATGGATTGAACCTACTGGTGAATAATGCTGCAATCTTGGCACGTGGCATCATTAAGACCAGCCAGGCTGAGGACATGAAAAACTCCTTCAACACCAATGTCATAGGACCCTTATTGATCATTCAGgaGTATCTTCCATATCTACAGACAGCAGCCAAAGCAAGTGGGACACCAGGCATGTCCAGTAATAAAGCAGCGATCATCAACATTTCCACTCTTGGAGGATCTATGACTAAAATGCCAGCAATGTTCTCTCAGTTCCCAGTGCTGCCATATTGTGTGAGCAAGGCAGGATTTAACATGCTGACTGTTTTGGCTGCTGAGGAGGTAAAGGGGGATGAGATTCTCTGCATGGTGCTTCATCCGGGATGGGTAAAGACTGATCTGGGTGGAAAAAATGCGACACTTGAACCGAAAGAGAGTGTGGAGGGGATGCTGCGTGTCATTGGTGGTCTTACCGAGAAGGAGCATGGTGGATTTCTGGACTACACTGGAGCAACTCTGCCCTGGTAaaccagaagaagaaaaaatatctcCAACATGAGAACTCTCAAAATGGCTGATCCAGGTCCAAACTGCTCGATTTAATTCATTAGCCATAAAAACCACATTATTATCTCTTATTGTATGTTTATGACTGACACATTATTGATATAAAGCCATATTTGTACCAGTAATCACTTAATGAAGCTAATCACTTAATGAACTTATAAAGCGGTACTGTGTTTTTTATCGTACATTGCAGAAACTTCTTTTATCAAACATACATGGGTGGTTCTAGAAAATTATTAATAGGTTGGCAAAGGGGTGACACCAGGACGCTGAGGAGTGGAAAGACTAAACGCCTTAAATACTGTTAAAGCAATATCTTACATAGAGCATAATACACAATAATGACACCAAATGAGCCATAATACACAATAATGACACCAAAGGAGCAGactgaattaaatttaaaaaaaaaaaaaacatatattataatccttcccagagaagggttgcagctggaagggcatccgctgcaaaaaaaagtgtgctggataagttggcggttcattccgctgtggcaacccaagattaataaaaggactaagcctaaaagaaaatgaatgaatgaatgaatgaattgttatcCATGAAATGGAAAGTATGAAAAATATATTCTAAGATAAAATAAGATTTACATTTATATGGAGCCTAATTTACTATTGCTTTGTTAGTAAGTGTATTGAGAATGCTTTTGGAAGTACTTGGAGATCAACAGTAGTGTGGGGAAAATCCTAATGGGTGAATATTGTTGTTCATCCACTAGAGGACAGCATTTACTGTGTGGTGGGTAGGTACCTATTCATATCATGTGATTAAATACTTGAATTTGGGTTTAATTTAACAAGTATTTGTGTCAGGAAATATAGTTCTTCTATAGACTCATGAACTCTTTTAttgtaattaatgtttttttgttttgtttttttgctttatgAATGTTATTACATGGACAATAAATCAACAAACC

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-22 No description available

Ensembl:

ensembl_id ENSDARG00000101749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050570 True 1874 mRNA 0.39 6 49043917 49058326

Neighbor

gene id symbol gene type direction distance location
XLOC_025705 zgc:163083 coding upstream 19347 49021079 ~ 49024570 (+)
XLOC_025704 NA coding upstream 37252 48998891 ~ 49006665 (+)
XLOC_025703 NA coding upstream 136087 48894467 ~ 48907830 (+)
XLOC_025702 hs3st3b1a coding upstream 174285 48842918 ~ 48869632 (+)
XLOC_025701 NA coding upstream 414146 48618161 ~ 48629771 (+)
XLOC_025707 zgc:112146 coding downstream 15682 49074008 ~ 49079318 (+)
XLOC_025708 zgc:123284 coding downstream 39449 49097775 ~ 49100456 (+)
XLOC_025709 BX649515.1 coding downstream 74015 49132341 ~ 49132477 (+)
XLOC_025710 NA coding downstream 76056 49134382 ~ 49134743 (+)
XLOC_025711 tecra coding downstream 338789 49397115 ~ 49421274 (+)
XLOC_025429 BX649540.1 misc upstream 18794881 30248739 ~ 30249036 (+)
XLOC_025698 NA non-coding upstream 576360 48464839 ~ 48467557 (+)
XLOC_025697 NA non-coding upstream 601021 48439066 ~ 48442896 (+)
XLOC_025712 NA non-coding downstream 397436 49455762 ~ 49459924 (+)
XLOC_025713 NA non-coding downstream 432228 49490554 ~ 49506172 (+)
XLOC_025715 NA non-coding downstream 506931 49565257 ~ 49624678 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G167741 NA non-coding CI01000033 null 243303 ~ 298391 (+)