LOC110529166 (LOC106571043)


Basic Information

Item Value
gene id LOC110529166
gene name LOC106571043
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 5344512 ~ 5362682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984609.1
TCTGTGACAATAAGCTTGTAATTGAAATCTAGCGTTAGCACTCCTGCTACAACCAGGCGGTCGATGTGTTGTTGCTACGGTTGCTAGTGGCAtttcccctccccacacacacactgttcagtGGTGGTATGCGATTTTAAATGGTCAAATGTACAGAGGCACATCAAGATAGAGAGCCAAGGATGTCTCATTACACAGACGAGCCTCGCTTCACCATCGAGCAGATCGACCTGCTCCAGAGGCTGCGGCGTACGGGCATGACCAAGCAGGAGATCCTCCACGCCCTGGACACCCTAGATCGACTGGACCGTGAGCACGGGGCCAAGTTTGGACATCGCACCTCCTACGGGGGAGGAGCAAGCAGCTCTGTGTCAGACCCTAATTGCACCACCTCCAACAACACTGCAGCCACCACCTCCTCGTCcagtattactgttgatgatgatgataataataataataataattccaccAGTGGGAGCAGTGAGGTTAACAACACCACCCTGGCCTCTTCCTGCACCAACTCTACCGTCGCACAGACACAGTACCTCTCACCGCGCGGGGGGCTGTCCCCGTCGCCTAGCAACAGCTACGAcacctccccactgccctctgcTGTCCGCCACTCCCCCGTGTCACTGGTCACCATGGCGCAGAACGGTGGGCGGGACAGCCTGGCGGCGACGCCCAATGGGAAGCTCTCGCCGCCGCGGTACCCGGTGAACAGTGCAGCGGCCGCCAGGGCGTTCGGGTTCGAGGCAACTGAGGAGGAGCTGGAAATCGATGACAAGGTGGAGGAGCTCATGAGgagAGACGGCAGCATTGTGAAGGAGGAGATCAAGTCGTTCCTGGGGAACAGGAGAATCTCTCAGGCTGTGGTGGCCCAGGTCACAGgaatCAGTCAGAGCAGGATCTCTCATTGGTTGCTTCAACACGGCTCTGACCTCAGTGAACAGAAGAAGAGAGCTTTCTACCACTGGTACCAGCTAGAAAAGACCTCCCCAGGTGCCACTCTAAACATGCGCCCCGCCCCCATGGCTATGGAGGAAATGGAGTGGAGACAGACCACACCCCATATAAGTACCGCCCCAGGAATCTTCCGGCTACGCAGAGGAAGTCGTTTTACCTGGAGGAAAGAATGTCTGGCTGTGATGGAGAGCTACTTCAATGACAACCAGTACCCTGACGAAGCTAAGAGAGAGGAGATCTCTAACGCCTGCAACGCTGTCATCCAGAAACCAGGGAAGAAGCTATCGGACCTGGAGAGAGTCAGCTCTCTTAAAGTCTACAACTGGTTTGCCAACCGACGCAAGGAGATCAAGAGACGAGCTAATATTGaaGCCACGATCCTGGAGAGCCATTGGATAGACGTCCAGAGTCCTGGAGGACATTCCAACAGCGACGACATCGATGGAGGGGACTACACAGAACAGGCCTGTGACCTGCCCTACTTCGACAAGAGACCCATGGCCAGGCCCTTTGGCTTCTACAGGCTGGAGCCCACTTCACCCACACAGGACGATGGTACTGACCACCAGGACCCCATCTCTCTGGCTGTGGAGATGGCTGCAGTCAACCATACCATCCTGGCTCTGTCCCGGACCGGAGGGGTGCCTAGCAACATCAAGACAGAGGTCCCGGACGATGACTGAAGAGGGGGTTACTACTGGACAgtgactgggaggaaggagtggagagagaagggtaaaAGCCAAGagaggatagtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtttgTGGTTCAAGAAATGTGAAGATGACCAAATGAAGCTATCAAACTCCAGCTACCCTCCTTCCTCTTGTTCTCAGCCCCTCCACGGTCCCAGTGAACTGTACCCTCCCTCCCCTTGTTCTCAGCTCCTCCACGGTCCCGGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCCCCTCCACGGTCCCAGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCTCCTCCACGATCCCAGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCCCCTCCACGGTCCCGGTGAACTGTACCCTGTCTTGTCCTCATCGGAGTGAGAAAGTTGAGTGGAGGATAATAAATGGCTGTTTTTCTCTGGACCTCCACCCCGATATGGTGCCACTGGCCCTGGGGACCTGGTCAAACAGTCTTCCCACTCCACCTCTCTGAGCCCAGACCCACATACCTCAatcctactgtactgtatatatggtatCTGTTCTCATCAGAGACATAGAATAGAAGTCTGTTCTAGAATAGAAGTGACACCATTTCTATGGTTGTCATACTGTCTCATCGTGTGCTGCCCTGAACCCATTTCCTTGTGCAATGCATTGGTAGTGCATCAGTGGCCTCTTACTAACACTgctggaagagggggagggatgtaGTCTATCACCCTGCCAAAGAACAGTCAGTTGACTACTCATCTGTGGATTGGACTGTTCTGATTGGACTAGACTGTTCCCGACTGTTCAATGTATCCTGCAGTCTACAGCTTTCATTCCTACTGG
>XM_036984610.1
TCTGTGACAATAAGCTTGTAATTGAAATCTAGCGTTAGCACTCCTGCTACAACCAGGCGGTCGATGTGTTGTTGCTACGGTTGCTAGTGGCAtttcccctccccacacacacactgttcagtGGTGGTATGCGATTTTAAATGGTCAAATGTACAGAGGCACATCAAGATAGAGAGCCAAGGATGTCTCATTACACAGACGAGCCTCGCTTCACCATCGAGCAGATCGACCTGCTCCAGAGGCTGCGGCGTACGGGCATGACCAAGCAGGAGATCCTCCACGCCCTGGACACCCTAGATCGACTGGACCGTGAGCACGGGGCCAAGTTTGGACATCGCACCTCCTACGGGGGAGGAGCAAGCAGCTCTGTGTCAGACCCTAATTGCACCACCTCCAACAACACTGCAGCCACCACCTCCTCGTCcagtattactgttgatgatgatgataataataataataataattccaccAGTGGGAGCAGTGAGGTTAACAACACCACCCTGGCCTCTTCCTGCACCAACTCTACCGTCGCACAGACACAGTACCTCTCACCGCGCGGGGGGCTGTCCCCGTCGCCTAGCAACAGCTACGAcacctccccactgccctctgcTGTCCGCCACTCCCCCGTGTCACTGGTCACCATGGCGCAGAACGGTGGGCGGGACAGCCTGGCGGCGACGCCCAATGGGAAGCTCTCGCCGCCGCGGTACCCGGTGAACAGTGCAGCGGCCGCCAGGGCGTTCGGGTTCGAGGCAACTGAGGAGGAGCTGGAAATCGATGACAAGGTGGAGGAGCTCATGAGgagAGACGGCAGCATTGTGAAGGAGGAGATCAAGTCGTTCCTGGGGAACAGGAGAATCTCTCAGGCTGTGGTGGCCCAGGTCACAGgaatCAGTCAGAGCAGGATCTCTCATTGGTTGCTTCAACACGGCTCTGACCTCAGTGAACAGAAGAAGAGAGCTTTCTACCACTGGTACCAGCTAGAAAAGACCTCCCCAGGTGCCACTCTAAACATGCGCCCCGCCCCCATGGCTATGGAGGAAATGGAGTGGAGACAGACCACACCCCATATAAGTACCGCCCCAGGAATCTTCCGGCTACGCAGAGGAAGTCGTTTTACCTGGAGGAAAGAATGTCTGGCTGTGATGGAGAGCTACTTCAATGACAACCAGTACCCTGACGAAGCTAAGAGAGAGGAGATCTCTAACGCCTGCAACGCTGTCATCCAGAAACCAGGGAAGAAGCTATCGGACCTGGAGAGAGTCAGCTCTCTTAAAGTCTACAACTGGTTTGCCAACCGACGCAAGGAGATCAAGAGACGAGCTAATATTGCCACGATCCTGGAGAGCCATTGGATAGACGTCCAGAGTCCTGGAGGACATTCCAACAGCGACGACATCGATGGAGGGGACTACACAGAACAGGCCTGTGACCTGCCCTACTTCGACAAGAGACCCATGGCCAGGCCCTTTGGCTTCTACAGGCTGGAGCCCACTTCACCCACACAGGACGATGGTACTGACCACCAGGACCCCATCTCTCTGGCTGTGGAGATGGCTGCAGTCAACCATACCATCCTGGCTCTGTCCCGGACCGGAGGGGTGCCTAGCAACATCAAGACAGAGGTCCCGGACGATGACTGAAGAGGGGGTTACTACTGGACAgtgactgggaggaaggagtggagagagaagggtaaaAGCCAAGagaggatagtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtttgTGGTTCAAGAAATGTGAAGATGACCAAATGAAGCTATCAAACTCCAGCTACCCTCCTTCCTCTTGTTCTCAGCCCCTCCACGGTCCCAGTGAACTGTACCCTCCCTCCCCTTGTTCTCAGCTCCTCCACGGTCCCGGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCCCCTCCACGGTCCCAGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCTCCTCCACGATCCCAGTGAACTGTACCCTCCTTCCCCTTGTTCTCAGCCCCTCCACGGTCCCGGTGAACTGTACCCTGTCTTGTCCTCATCGGAGTGAGAAAGTTGAGTGGAGGATAATAAATGGCTGTTTTTCTCTGGACCTCCACCCCGATATGGTGCCACTGGCCCTGGGGACCTGGTCAAACAGTCTTCCCACTCCACCTCTCTGAGCCCAGACCCACATACCTCAatcctactgtactgtatatatggtatCTGTTCTCATCAGAGACATAGAATAGAAGTCTGTTCTAGAATAGAAGTGACACCATTTCTATGGTTGTCATACTGTCTCATCGTGTGCTGCCCTGAACCCATTTCCTTGTGCAATGCATTGGTAGTGCATCAGTGGCCTCTTACTAACACTgctggaagagggggagggatgtaGTCTATCACCCTGCCAAAGAACAGTCAGTTGACTACTCATCTGTGGATTGGACTGTTCTGATTGGACTAGACTGTTCCCGACTGTTCAATGTATCCTGCAGTCTACAGCTTTCATTCCTACTGG

Function

NR:

description
LOW QUALITY PROTEIN: homeobox-containing protein 1-like

GO: NA

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984609.1 False 2532 mRNA 0.54 9 5344512 5362682
XM_036984610.1 True 2529 mRNA 0.54 9 5344512 5362682

Neighbor

gene id symbol gene type direction distance location
LOC110529164 LOC106571040 coding downstream 140090 5187359 ~ 5204422 (-)
LOC110529294 LOC105029941 coding downstream 463066 4845346 ~ 4881446 (-)
LOC118965591 NA coding downstream 512370 4772146 ~ 4832142 (-)
LOC110529274 LOC106571028 coding downstream 722699 4618977 ~ 4621813 (-)
LOC110529272 tmeda coding downstream 725899 4591470 ~ 4618613 (-)
LOC110529167 LOC106571044 coding upstream 1537 5364219 ~ 5450340 (-)
znf395b LOC106571047 coding upstream 173074 5535756 ~ 5551550 (-)
si:dkey-229d11.5 NA coding upstream 221163 5583845 ~ 5586635 (-)
LOC110529170 LOC106571034 coding upstream 286814 5649496 ~ 5739571 (-)
LOC118965593 NA coding upstream 347463 5710145 ~ 5711121 (-)
G667481 NA non-coding downstream 55162 5289131 ~ 5289350 (-)
G667454 NA non-coding downstream 118780 5225329 ~ 5225732 (-)
G667434 NA non-coding downstream 188819 5155071 ~ 5155693 (-)
G667416 NA non-coding downstream 208881 5134135 ~ 5135631 (-)
G667403 NA non-coding downstream 244499 5099663 ~ 5100013 (-)
G667506 NA non-coding upstream 22148 5384830 ~ 5385178 (-)
G667507 NA non-coding upstream 26368 5389050 ~ 5389391 (-)
G667509 NA non-coding upstream 38192 5400874 ~ 5406097 (-)
G667514 NA non-coding upstream 64648 5427330 ~ 5427627 (-)
G667541 NA non-coding upstream 110431 5473113 ~ 5473893 (-)
G667122 NA other downstream 854292 4488806 ~ 4490220 (-)
G665927 NA other downstream 1674365 3668232 ~ 3670147 (-)
G665797 NA other downstream 1822889 3520790 ~ 3521623 (-)
G665718 NA other downstream 1926224 3417113 ~ 3418288 (-)
G665655 NA other downstream 2003552 3340056 ~ 3340960 (-)
G668192 NA other upstream 843876 6206558 ~ 6284021 (-)
G668238 NA other upstream 917514 6280196 ~ 6281640 (-)
wdr21 dcaf4 other upstream 1423850 6786377 ~ 6801903 (-)
G669087 NA other upstream 1627168 6989850 ~ 6991612 (-)

Expression


Co-expression Network