XLOC_025726


Basic Information

Item Value
gene id XLOC_025726
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 51417422 ~ 51446996 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050592
GAAAGCTGTGGGGATGCGTGTGTTTGTACGTGTCACCGGGACGAGCCATGTGTGGACCGCTGCTGCAACCTGTGCTGTCAGGTCTGTCTAGACGGCTGCTGTCTTATTTGCTCGGATGACTGTCGATATACTCTGTGTTTCATTTGCACAAGGGTGGCAGACTCTTGTGCTGCAGTTCTGACCGTTGAACAGCCCAGATCTACAATGAAACAAACAGAAGGTTCTGCTTTGGAAGGAGGCCAGTTGGTTTAAATCACCCACTGAAACATAATGGAAGCTGATGTTTTGGATAAAGAGCCCTTTCCTACATCATGATGCCATTTTCTGTACAGAAAGAGACTGAAAATATAAGAAGAAACTGTTCTTTCTTACTGCAGTACATTTGTAGATTATTTGCTACCTCTGTAAGTTCACCCATGTGCCATTGTATATATGCAGTATTGTGTTATTCATATTAAAGTGATTGTGTGAATTATTATGTGTCTGAAGCATCTATCGAAAAGTAAAAACACTTGTGCACTCATGCAAGAACAGGAAGGAAAAAAAGGGTTTGTTTGATGTAGTTTGCTCCAGAATGACTGACTCTCAGAGGACGAGCAGGAAAAACTTGATTTGCACACCCTGTGGAACCAGCTGTCACAGAGGTACAGTATTTATATGGGTCCACCCAAGACGTACGACAGACCAGCCCTGTCAACCTCACGACAACTCAGCCTCGTGATTGAGGATTTTAATTTCTTCCCGGTTTCAAGTGGGACTCGAGACAAAAAGCAAAATTAAAGGAAAAGAAGAAGACTCTAAACGTCTGAAGACACTTGAAAAGGTCTGAACTAGGTTACCAGCCATGGAGGAGGAGTACAAGAGCCCCCCACCATCCTATGAAGAGGTTATAACCCAGCAGCAGACAAGCAACACCAAGCAAAGCCAGTCGGCTGATAGGAGCCAGAACGCATGCTGCAGGTGCTGTATGAGCACCAGGAACTGTCTGATGAGCCCTGAGTGTGGACGAGCTCTCAACATCGCCAGTGTTGTCGCCATGTGCGGCATGTGCATACGAATGTTTGTCTAGGGCTGTGTGCCATCTCTTCCAGATCTCTCATCCAGTGGTGTTCTTCTCAAATTAAGAGACAAACAAAGACGTTTACTGTGTTCCAAGCCCAAATGATCTGCAACATTTATAAGCTCCACATGACCCAATGCCAATTCAAATGCTGTCGAAAATAGCAGGCAGCACTGCGTACTTCACAGAAAATCTCACAAACACACTGTGACCAAAGATGACCATCTAAAATGGGAAATGTCAAATACTAATTGTTGTTTATATATACAAAGTAGCTGTTCAATCAGCACTGACACATATTGTTGTAAAAGAGTCTTTTTTCATGTGTTAagtttagcaacatgctaacatagCTAGCTTCTATAAGCGACATGTGCATTTTTTGGGTGTTTAAACTATAGAGTGATAGTTAACTTATTCATGAACTAGcaccttaaatttgtaaatactgtgtaatattGGGATGTGTTTCAGTCAGAGACCGTTAACATACATGTTATATATCTGATATAGAGAATTAAGGCATGGTTACAGTTTTGTTCTGCAAATTTTTACAGATGAAACAATAATGGTTTCAGTCATTTCTGCAGGAATCCGCACAATATGGAATTTTACTTCAGGGTGAAAGATTTACCAAGGATTTTGAAGCAGGTTCCAATTGATAACACCAATTTGAGCAAGAGAAAGATGTTCAGTTTGATTTGGCTTTTGTGTGAACTGAGTGTCATGCATTCCTACAGTGGTGACAAAAGGTCTGTTTCATCTGTGAGATTCTGCTGGAATGCTGTGACCGCAGCTACATATTTTCCATTTTTGTTCAGATTATGCCTCACTCATATAGATTTTGATGAATTTGAAGAAATATTCTGAAAATCTAAAATAGTTTTAGTCTTTTAGAAAGGAtcgttgcttttatttttatcttttgttcTTGGTTTACTTTTTCTTTCATAAATTGGAACCAGTAATGTCTACTTTAATTATGTATAGTTGTGACTTTGCATTTCTTTGTAGTATTTATTCCAAATAAATCTCATGTGCCagcaaaataa

Function

GO:

id name namespace
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050592 True 2112 lncRNA 0.40 5 51417422 51446996

Neighbor

gene id symbol gene type direction distance location
XLOC_025725 NA coding upstream 394365 51011289 ~ 51023057 (+)
XLOC_025724 NA coding upstream 608229 50808637 ~ 50809193 (+)
XLOC_025723 NA coding upstream 621205 50795321 ~ 50796217 (+)
XLOC_025722 gsg1l2a coding upstream 635917 50602866 ~ 50781505 (+)
XLOC_025721 BX649397.1 coding upstream 864674 50537127 ~ 50552748 (+)
XLOC_025727 ttyh2l coding downstream 116699 51563695 ~ 51657722 (+)
XLOC_025728 chmp6a coding downstream 213162 51660158 ~ 51677582 (+)
XLOC_025729 baiap2a coding downstream 237967 51684963 ~ 51948026 (+)
XLOC_025730 NA coding downstream 311349 51758345 ~ 51758711 (+)
XLOC_025731 NA coding downstream 448328 51895324 ~ 51900899 (+)
XLOC_025429 BX649540.1 misc upstream 21168386 30248739 ~ 30249036 (+)
XLOC_025719 NA non-coding upstream 1128934 50286780 ~ 50288488 (+)
XLOC_025735 NA non-coding downstream 777107 52224103 ~ 52264146 (+)
XLOC_025737 BX511132.1 non-coding downstream 920306 52367302 ~ 52379472 (+)
XLOC_025738 NA non-coding downstream 930582 52377578 ~ 52389039 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G168439 NA non-coding CI01000033 null 1575492 ~ 1582933 (+)