LOC110529694 (LOC106571481)


Basic Information

Item Value
gene id LOC110529694
gene name LOC106571481
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25801320 ~ 25805570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985174.1
TAGTAGTTTAACACTCAAAGTAACTTTGATTTGTAATTTTACTCTgtatgttttctgtctctgtgtaccTGTTAGCACATATTCTATCCAGTAGGTTTAGTAAGAACCTGCTTTTTTAATAAAACCTAGGTAGCTTGCAGGCATGACAGAGTTGAGTTAAGAGCAATAAACTCTGAGTAGAAACACCATTGAATATTGCAGACAACTTTGTGCGTCATAACGTTACAATATGGACAGAAATGGTCTGTTGAGTTTAGTTTGTTGACTTTTCAGGTGTGGTTGGAATGGTGGAGGTGGTCCTGAGGAGCGTAGCGGCTGGGTTCGCCATCGGAGACACGGCTCTGGCTGCAGCCGAACCCTACTTGACCACTACTGGACCACTTATGATCACCGCTGCCCGAGCAGCAGGGGAGGTTGGCGTGGCGGGGGTGGGAGCGGTAGCCACGTGCCTGGTGTTCACTACGGCGTTGGTATCCATGGGAACCGGACTTCTCCTCGCCTCCATGGTGATGCGACtgatggggagggaaggaggaggtggaGCTACAGCAAAGGCGGCGGAGATTGCTGGAGGGGTCACCATCACGGTGGGAGCCGTGGTAACTGGAACACTTGTGGGCGCACTCCCCGTGTGGGGCCACTTCCTGGTCCAGTGCGTCATGGTCCTGCTAGTGTACCCATACACTTACGTGAATGAGATGACCGCGGTCCTCTCTGTTTTTTTCTCTACTCTCTACCTCAGTGTGGCGATGGGCCGTTTGGGCGTCATCACAGGACTATTTACTATGGCCATTGCTATCTCGTCCCTCTGTGTCCTACTGAAGGCCCTATCAGAGagaagaatacagcagagagctgAAGGAAACAGCAAATGGTCAGAGAGATTACTGCTATACTCAGTTGTTGTGGCAATAGTAGGTTTCCCTATGGGTACGGGGGATACAGGTGGGACAGGGTCAGAGGTGACTGTGATGCTGGGGTCAGTGCTGTGGGTGGGGACCCTGGCTGCAGGACTGCTAGGAGCTGCTCTGGGAACAGTGGCTGTGGTGAGTTTGGGACCAGAGGGGGCAGCGAGGGTGGCGGTGGGGGCGGCAGTGGCATCCTCTTGTACCCTGAGACTCATTCTACCAGTATGCGCTTTGCTGGGGTCGGGGGGCAGCATAGGGGGTCTGTTAGGGGGAGCCACGGCTGCAGGGGTGTCACTGGGGGCCGCGAGTGTTGCTGCTGGATCGGAATTTAGAACCAGAGCGACGACACTAGTAGTTCTAGGCTCTGTAGCAGTAGGTGCGGTGCTAGGCTTCTGGGGTCTAGCACTGGGAACTGTCATTCTGGGACCAGCAGAAATTATAACAGTGACCTTTGTTGCAGTGGGGGCCTTTATACTGGGTGCACCAAAGAGTCCGTTCCACACTCAGATTAAACTGAGGGGTGAGGTCCTCACAGGGACCCGCCTGATAGGAGGAATCGGCATGGAAACAGTAACCGCGGCTGCTGCACCCCTCGGAGCGGGGGCACTGGGAACAGCAGCGCTAGGAACTGCTGCACTGGGAAGACTGGGGACAGTAGGGGTACTGGTGGCAGCGGTAGTGGCCCTGGGAAAAACGACATGTGGATTGGGAGCCTGAGACAGGGGCTTCCAGCAGCAGACTGTGTTATCTCTGctaattctctctctgtgtgtgtgtgcacgtattTGTACGTTACTGAGACTTTACAGAATACATTGACATTATTTGCTGACAATGGCAGGTTAATGACCTAACAAATCCCAATAAACTTGAA
>XM_021612140.2
tttgaaTGGGTTAGTTGCTGGAAAAACTGCAGTGCTTGTCACATGTCATGAGAATCCTAGAGGTGGAGCTAAAGACAGGAAGTCAGTGATCCACTTGCTGTTATGGCAGGAACAGACCAGGGTGTGGTTGGAATGGTGGAGGTGGTCCTGAGGAGCGTAGCGGCTGGGTTCGCCATCGGAGACACGGCTCTGGCTGCAGCCGAACCCTACTTGACCACTACTGGACCACTTATGATCACCGCTGCCCGAGCAGCAGGGGAGGTTGGCGTGGCGGGGGTGGGAGCGGTAGCCACGTGCCTGGTGTTCACTACGGCGTTGGTATCCATGGGAACCGGACTTCTCCTCGCCTCCATGGTGATGCGACtgatggggagggaaggaggaggtggaGCTACAGCAAAGGCGGCGGAGATTGCTGGAGGGGTCACCATCACGGTGGGAGCCGTGGTAACTGGAACACTTGTGGGCGCACTCCCCGTGTGGGGCCACTTCCTGGTCCAGTGCGTCATGGTCCTGCTAGTGTACCCATACACTTACGTGAATGAGATGACCGCGGTCCTCTCTGTTTTTTTCTCTACTCTCTACCTCAGTGTGGCGATGGGCCGTTTGGGCGTCATCACAGGACTATTTACTATGGCCATTGCTATCTCGTCCCTCTGTGTCCTACTGAAGGCCCTATCAGAGagaagaatacagcagagagctgAAGGAAACAGCAAATGGTCAGAGAGATTACTGCTATACTCAGTTGTTGTGGCAATAGTAGGTTTCCCTATGGGTACGGGGGATACAGGTGGGACAGGGTCAGAGGTGACTGTGATGCTGGGGTCAGTGCTGTGGGTGGGGACCCTGGCTGCAGGACTGCTAGGAGCTGCTCTGGGAACAGTGGCTGTGGTGAGTTTGGGACCAGAGGGGGCAGCGAGGGTGGCGGTGGGGGCGGCAGTGGCATCCTCTTGTACCCTGAGACTCATTCTACCAGTATGCGCTTTGCTGGGGTCGGGGGGCAGCATAGGGGGTCTGTTAGGGGGAGCCACGGCTGCAGGGGTGTCACTGGGGGCCGCGAGTGTTGCTGCTGGATCGGAATTTAGAACCAGAGCGACGACACTAGTAGTTCTAGGCTCTGTAGCAGTAGGTGCGGTGCTAGGCTTCTGGGGTCTAGCACTGGGAACTGTCATTCTGGGACCAGCAGAAATTATAACAGTGACCTTTGTTGCAGTGGGGGCCTTTATACTGGGTGCACCAAAGAGTCCGTTCCACACTCAGATTAAACTGAGGGGTGAGGTCCTCACAGGGACCCGCCTGATAGGAGGAATCGGCATGGAAACAGTAACCGCGGCTGCTGCACCCCTCGGAGCGGGGGCACTGGGAACAGCAGCGCTAGGAACTGCTGCACTGGGAAGACTGGGGACAGTAGGGGTACTGGTGGCAGCGGTAGTGGCCCTGGGAAAAACGACATGTGGATTGGGAGCCTGAGACAGGGGCTTCCAGCAGCAGACTGTGTTATCTCTGctaattctctctctgtgtgtgtgtgcacgtattTGTACGTTACTGAGACTTTACAGAATACATTGACATTATTTGCTGACAATGGCAGGTTAATGACCTAACAAATCCCAATAAACTTGAA
>TU785453
TGCTGTTATGGCAGGAACAGACCAGGGTGTGGTTGGAATGGTGGAGGTGGTCCTGAGGAGCGTAGCGGCTGGGTTCGCCATCGGAGACACGGCTCTGGCTGCAGCCGAACCCTACTTGACCACTACTGGACCACTTATGATCACCGCTGCCCGAGCAGCAGGGGAGGTTGGCGTGGCGGGGGTGGGAGCGGTAGCCACGTGCCTGGTGTTCACTACGGCGTTGGTATCCATGGGAACCGGACTTCTCCTCGCCTCCATGGTGATGCGACtgatggggagggaaggaggaggtggaGCTACAGCAAAGGCGGCGGAGATTGCTGGAGGGGTCACCATCACGGTGGGAGCCGTGGTAACTGGAACACTTGTGGGCGCACTCCCCGTGTGGGGCCACTTCCTGGTCCAGTGCGTCATGGTCCTGCTAGTGTACCCATACACTTACGTGAATGAGATGACCGCGGTCCTCTCTGTTTTTTTCTCTACTCTCTACCTCAGTGTGGCGATGGGCCGTTTGGGCGTCATCACAGGACTATTTACTATGGCCATTGCTATCTCGTCCCTCTGTGTCCTACTGAAGGCCCTATCAGAGagaagaatacagcagagagctgAAGGAAACAGCAAATGGTCAGAGAGATTACTGCTATACTCAGTTGTTGTGGCAATAGTAGGTTTCCCTATGGGTACGGGGGATACAGGTGGGACAGGGTCAGAGGTGACTGTGATGCTGGGGTCAGTGCTGTGGGTGGGGACCCTGGCTGCAGGACTGCTAGGAGCTGCTCTGGGAACAGTGGCTGTGGTGAGTTTGGGACCAGAGGGGGCAGCGAGGGTGGCGGTGGGGGCGGCAGTGGCATCCTCTTGTACCCTGAGACTCATTCTACCAGTATGCGC
>TU785454
TGCTGTTATGGCAGGAACAGACCAGGGTGTGGTTGGAATGGTGGAGGTGGTCCTGAGGAGCGTAGCGGCTGGGTTCGCCATCGGAGACACGGCTCTGGCTGCAGCCGAACCCTACTTGACCACTACTGGACCACTTATGATCACCGCTGCCCGAGCAGCAGGGGAGGTTGGCGTGGCGGGGGTGGGAGCGGTAGCCACGTGCCTGGTGTTCACTACGGCGTTGGTATCCATGGGAACCGGACTTCTCCTCGCCTCCATGGTGATGCGACtgatggggagggaaggaggaggtggaGCTACAGCAAAGGCGGCGGAGATTGCTGGAGGGGTCACCATCACGGTGGGAGCCGTGGTAACTGGAACACTTGTGGGCGCACTCCCCGTGTGGGGCCACTTCCTGGTCCAGTGCGTCATGGTCCTGCTAGTGTACCCATACACTTACGTGAATGAGATGACCGCGGTCCTCTCTGTTTTTTTCTCTACTCTCTACCTCAGTGTGGCGATGGGCCGTTTGGGCGTCATCACAGGACTATTTACTATGGCCATTGCTATCTCGTCCCTCTGTGTCCTACTGAAGGCCCTATCAGAGagaagaatacagcagagagctgAAGGAAACAGCAAATGGTCAGAGAGATTACTGCTATACTCAGTTGTTGTGGCAATAGTAGGTTTCCCTATGGGTACGGGGGATACAGGTGGGACAGGGTCAGAGGTGACTGTGATGCTGGGGTCAGTGCTGTGGGTGGGGACCCTGGCTGCAGGACTGCTAGGAGCTGCTCTGGGAACAGTGGCTGTGGTGAGTTTGGGACCAGAGGGGGCAGC

Function

NR:

description
uncharacterized protein LOC110529694

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985174.1 False 1782 mRNA 0.53 2 25801320 25805433
XM_021612140.2 False 1630 mRNA 0.56 2 25801320 25805570
TU785453 False 891 TUCP 0.58 2 25801964 25805475
TU785454 True 825 TUCP 0.58 2 25802030 25805475

Neighbor

gene id symbol gene type direction distance location
LOC110529218 NA coding downstream 926 25796900 ~ 25800394 (-)
LOC110529693 LOC106571480 coding downstream 26292 25758877 ~ 25775028 (-)
LOC110529692 LOC106607895 coding downstream 42970 25744024 ~ 25758350 (-)
LOC110529682 LOC106571470 coding downstream 297885 25497573 ~ 25503435 (-)
LOC110529680 disp1 coding downstream 311046 25416277 ~ 25490274 (-)
LOC110529696 LOC106571482 coding upstream 49010 25854580 ~ 25873677 (-)
LOC110529697 NA coding upstream 186854 25992424 ~ 25998685 (-)
LOC110529219 NA coding upstream 201312 26006882 ~ 26017782 (-)
LOC110529220 LOC106571486 coding upstream 281876 26087446 ~ 26094609 (-)
LOC110529700 LOC106571487 coding upstream 289371 26094941 ~ 26106801 (-)
G689883 NA non-coding downstream 21958 25779126 ~ 25779362 (-)
G689874 NA non-coding downstream 63619 25737493 ~ 25737701 (-)
G689873 NA non-coding downstream 63898 25737222 ~ 25737422 (-)
G689870 NA non-coding downstream 65390 25735460 ~ 25735930 (-)
G689869 NA non-coding downstream 65999 25734996 ~ 25735321 (-)
G689895 NA non-coding upstream 5485 25811055 ~ 25811397 (-)
G689966 NA non-coding upstream 102422 25907992 ~ 25908308 (-)
G689981 NA non-coding upstream 115254 25920824 ~ 25921483 (-)
G690009 NA non-coding upstream 138166 25943736 ~ 25943945 (-)
G690021 NA non-coding upstream 150193 25955763 ~ 25956270 (-)
G689810 LOC106571475 other downstream 136655 25664165 ~ 25664665 (-)
G689723 rad51 other downstream 280032 25517566 ~ 25521288 (-)
G689685 NA other downstream 390188 25410823 ~ 25411132 (-)
G689656 tlr5m other downstream 393973 25376122 ~ 25407347 (-)
LOC110529665 LOC106571552 other downstream 803485 24992535 ~ 25010299 (-)
G690033 NA other upstream 159609 25965179 ~ 25965493 (-)
G690073 NA other upstream 185108 25990678 ~ 25991143 (-)
cenpw LOC106571497 other upstream 623545 26428702 ~ 26430888 (-)
G691447 LOC106571509 other upstream 1058640 26864210 ~ 26868078 (-)
G691747 NA other upstream 1509998 27315568 ~ 27315935 (-)

Expression


Co-expression Network