LOC110530613 (LOC106569433)


Basic Information

Item Value
gene id LOC110530613
gene name LOC106569433
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75029049 ~ 75031717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986259.1
TTGACCTCGCACAGGTGTTCAGAATTAAGATGATTAGGATCAATTGGTCCATAAATATTTCTAGTTTGTAGGCACTCCTAGATCATTCAGTCATGTCTCTCCTTTGGCAATGTGCAATTGTTTTGGCTGTCGTAGCAGCAAGCGCTGCCAATGAAGATTTTAATGTGGATTGTGAGAAACACTCCATTAAAGTGACATGGAAGGTCAGTCCAGAGTTGGTTGAACATGCTGCCCGTCttttccttggacactgtgttccGTCCACATTTTCTGTTCTTCCCACGGGAGAAGGGATGGCGACATTCCACTACAACCTCAATGGCTGTGCCATCAAGAAACGGGTGACTGGCAAAAAACACATCTATTCAACCAGCCTGACTTACAGACCTAACCGAAAGCCCAAACCTGCTGCCATTAGTCACCATATTAAGTGTGTTTACATAAGACCTGAGGGATGGATTCCCCCATTCCTTATCCCTGCCTATGGTAGTGCTGAGGGTCATGGAGGATTGGTTTTCCACATGGCACTCCTCAATGAAGACCTTACTGGTCTGGCTAAGAGCAGCCTGTTTCCCCTGGGCTCTTTCATCCCCATCTGGGCAGCAGTGGATCAGAAGGACCATCAGCCCTTGCTGCTGCTCTTGGAGGAGTGTGTGGCAGCCACAACACCAGAACTGCAGTCTGCGAGCCTGGTGTACCCCATCATCACCAACAAGGGTTGCCTTGCAGATGGGAAGAATGGGAACTCCAGGTTCCTGCCTAGGTACCACTCGTCTGCTATTCTGCTTTACCTGCAGTCCTTCAAGTTTGCCTTAGGCGAGGAAGTGTATATTCATTGTAAGCTTGTTGCATGGGACCCTGAGGTTTTTGATATAGAAAAGAAGGCCTGCCACTACATTAAAGAGACTGGAGAATGGGAGCTGCTGGACGACCCGTCTCAAAGTGACCTCTGCAAGTGCTGTGACTCGAGTTGCAAGCCTCGGTTGAAGAGGGGTGTGGATTCAGaaCCCCAGGGCCTGGTTCAAAACTCTGTTCTTGGACCGCTCACAATAGTGGAAAACTCTGAAACCCGGATCCCCAGTGAATTTGTAAAATATCCTACTGTAGAACAAGTTGACTGGTTGGTGTAATGGTCTGGAACACTTTgcttgtcagGGATGGCTGTCTTTTCTGTCTCTACAGCCATCTAATTGTAGGTGGCCTGAAGGGTGCATCACTTTCCACTATCCCCAGTATGGATATGAAGTCCTTTGACTTGAGCATGTTTCAATAAAATGAGTactttacaa
>TU847763
ccttcccctctctgttgCATGTAGAAGACCTTACTGGTCTGGCTAAGAGCAGCCTGTTTCCCCTGGGCTCTTTCATCCCCATCTGGGCAGCAGTGGATCAGAAGGACCATCAGCCCTTGCTGCTGCTCTTGGAGGAGTGTGTGGCAGCCACAACACCAGAACTGCAGTCTGCGAGCCTGGTGTACCCCATCATCACCAACAAGGGTTGCCTTGCAGATGGGAAGAATGGGAACTCCAGGTTCCTGCCTAGGTACCACTCGTCTGCTATTCTGCTTTACCTGCAGTCCTTCAAGTTTGCCTTAGGCGAGGAAGTGTATATTCATTGTAAGCTTGTTGCATGGGACCCTGAGGTTTTTGATATAGAAAAGAAGGCCTGCCACTACATTAAAGAGACTGGAGAATGGGAGCTGCTGGACGACCCGTCTCAAAGTGACCTCTGCAAGTGCTGTGACTCGAGTTGCAAGCCTCGGTTGAAGAGGGGTGTGGATTCAGaaCCCCAGGGCCTGGTTCAAAACTCTGTTCTTGGACCGCTCACAATAGTGGAAAACTCTGAAACCCGGATCCCCAGTGAATTTGTAAAATATCCTACTGTAGAACAAGTTGACTGGTTGGTGTAATGGTCTGGAACACTTTgcttgtcagGGATGGCTGTCTTTTCTGTCTCTACAGCCATCTAATTGTAGGTGGCCTGAAGGGTGCATCACTTTCCACTATCCCCAGTATGGATATGAAGTCCTTTGACTTGAGCATGTTTCAATAAAATGAGTactttacaatggtgtttgtttctAATGGTTGTCAAAATGCTATGATCCTGATGAGATGTACCTTAAAT

Function

NR:

description
uncharacterized protein LOC110530611

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986259.1 False 1289 mRNA 0.48 11 75029108 75031717
TU847763 True 835 lncRNA 0.48 7 75029049 75030532

Neighbor

gene id symbol gene type direction distance location
LOC110530612 LOC106569433 coding downstream 6118 75020372 ~ 75022990 (-)
LOC118965556 LOC106569433 coding downstream 14631 75011860 ~ 75014477 (-)
LOC118965555 LOC106569433 coding downstream 23351 75003193 ~ 75005757 (-)
LOC110530611 LOC106569433 coding downstream 31810 74994681 ~ 74997298 (-)
LOC118965554 LOC106569433 coding downstream 40543 74985951 ~ 74988565 (-)
LOC110530615 LOC106569429 coding upstream 2338 75034055 ~ 75048362 (-)
LOC110530618 slc7a8 coding upstream 17607 75049324 ~ 75068682 (-)
LOC110530616 LOC106569427 coding upstream 38926 75070643 ~ 75076074 (-)
LOC110530622 LOC106587759 coding upstream 420314 75452031 ~ 75457404 (-)
LOC118965557 NA coding upstream 467871 75499588 ~ 75503959 (-)
G746724 NA non-coding downstream 61832 74966199 ~ 74967276 (-)
G746764 NA non-coding downstream 74217 74954627 ~ 74954891 (-)
G746763 NA non-coding downstream 75421 74953173 ~ 74953687 (-)
G746760 NA non-coding downstream 79242 74949429 ~ 74949866 (-)
G746757 NA non-coding downstream 81580 74947307 ~ 74947528 (-)
G746779 LOC106569426 non-coding upstream 57968 75089685 ~ 75096648 (-)
G746823 NA non-coding upstream 108539 75140256 ~ 75140465 (-)
G746825 NA non-coding upstream 109124 75140841 ~ 75141086 (-)
G747217 NA non-coding upstream 220738 75252455 ~ 75252941 (-)
G747223 NA non-coding upstream 235347 75267064 ~ 75317869 (-)
G746730 NA other downstream 189018 74839731 ~ 74840090 (-)
G746434 NA other downstream 669134 74342629 ~ 74359974 (-)
LOC110530984 NA other downstream 1084678 73939248 ~ 73944430 (-)
G745292 c8 other downstream 1637675 73385652 ~ 73391433 (-)
G745300 NA other downstream 1647407 73381301 ~ 73381701 (-)
G747266 NA other upstream 331025 75362742 ~ 75363491 (-)
G747337 NA other upstream 433363 75465080 ~ 75465616 (-)
LOC118965558 NA other upstream 495718 75527435 ~ 75535384 (-)
LOC110530627 LOC106600212 other upstream 545965 75576652 ~ 75578356 (-)
G747442 NA other upstream 612578 75644295 ~ 75723894 (-)

Expression


Co-expression Network