XLOC_026440 (shank1)


Basic Information

Item Value
gene id XLOC_026440
gene name shank1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30714111 ~ 30861177 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051528
GAGGATATGCATTGGCTCCCAGCGCTCACCGGCTCACGGGACACACTCTAAAATGTAATTTCCAAAGGCCTAATTGTTGCCGCGGTGATTTTATTTTCCtccatttcatttttctttcttttttggtttatttgccCTCTCTCCTCTTCTCTTTTCGCcgttattcTGCTGGATTTTCCCCTTCTTTTATAACTGCTATCATTCTCTCCATTTACAAAGGAGGGATCTACAAATAAAGGCAACCACAGCAAGACATGTGTCTCTGGGGATGATGCCGTTGCCGCTGGTGCCACTCTCCCTGTCGCCATGACGATGCCGCTCAGCCCCCTCTCCAGCGACGAGGAGCAGCAAAGGATGCTGGGAAACAGTCAACACCTTTATCCAGGGgcggaagaggaagaggaggaggaagaggaaatgGACGATGATGGCATGGACGAGGAAGGTGAGGAGGAGAACGGAGAGCTGGAGATGGACGATGAAGAGGAAGTGGACGATGAAGATGACATCAGGCGAGGACCAGGGCATTTGAGAGGAGGCAGGGAAGAGGGGCACAGGCAAAAAGGCACAATGGCTGGACGACTCCCAGGAGACAGACCCATTCGACCCGGCAACCCGGGCCATGCGGCCAACCCTTATTCGTCCAATCCTGGACCAACCCACCAAACGTCAACcaatcagcagcagcagcaaccgCAGAGGAAGCTACGAGAGCGGAGCTCCAGCAACGCACCTGACGACACACACGTAGCTCTGATGGTCTTTCGAATTGGCATTCCTGATATTAAACAGACGAAATGTCTGAGGTTCAACCCTGATGCAACCGTATGGAAGGCGAAGCAGCAGGTGATGTGCAGTCTGACTGAGTCTCTGAGGGATGTTTTAAACTATGGTCTTTTTCAACCTGCCACTGACGGGCACGATGCCAAGTTCCTGGAGGAGGAGAGGCCGCTCCGCGAGTACCCACAATCCTTTGAGAAAGGAGTACCTTACCTGGAGTTCCGATATAAAACCAGGGTGTACAAACAGACAAATCTAGATGAGAAGCAGCTGGCCAAACTACATACTAAGGCCAGTCTGAAGAAGTTCATGGACTACATCCAGACCAGCGCTGTGGAAAAGGTAGCCAAACTTATTGATAAAGGACTTGACCCCAACTACCACGACCCTGATACAGGAGaGACTCCACTCACTCTGGCCGTACAGACGGAGCCGGGCGGAAGTGAGATCATCAGGGTGCTGGTGATGGGTGGAGCCCACATTGACTTTAGGGCGAGAGATGGCTTGACCCCTCTGCACAAGGCTGTCAGAGCACATGCACACACTGCCCTACTGACGCTGTTGTCTTTGGGGGCGTCTTCTGATTATAAGGACAGCCGTGGGCTGACACCACTGTACCACACTGTGCTGATAGGGGGCGACACCTCCTGCTGCGAGACCCTGCTATACCACAGAGCCAGGCTGGGGCTCCGCGATGAGAACGGCTGGGATGAGACACATcagGCGTGTCAAAATGGGAACTCTCAACATTTAGAGCACCTGCTTTTTTATGGTGCAGACTCCTCATCCCAGAATGCCTCAGGAAACACTGCCCTGCACATATGTGCTTTATATAACAAGGAGAGCTGTGCCCGCATCCTGCTTTATCGAGGAGCTAAGAAGGACACAAAGAATAACAGTGGGCAGAACTCCTTCCAGGTGGCTGTGATGTCTGGCCATTTTGAGCTTGgagaaataattaaaaaccacCGTGAATCAGATGTAGTCCCCTTTTTGGAGTCTCCTAAATATGCCCCGCAAAGGAGGGAGAGCTCACGGACACTTGGACTGCCTCATCCGCACCCCTTTTTACGGGCCAACAGTGATAACAGCATGAATGTGCCAGACTGGATTGCCTTTCCCAATGCTGCAGGATCAAGCATCGTCTCTGTACAGGGTCTAAAGCATGGCGGCACCTTACGTAGCTCCAGCAGTCCCCGTGGAGCCCGAACACGTTCCCCATCTCGTGGCCGAACAGGTGACCGGGACGATCGGAGCCGGCAAACACGTGGAAGACAAGGAGCGGGATCCATCAGTAGTCAGGGCACAGCCAGCGGGCAGCGGCGGCGTCTCTACAGCGCCGTTCCTGGCCGAGTTTTTGTTGCCACTCGCTCACACTCGGCCCAGGGTGACCGCGAAATCAGCTTCAACAAGGGAGACAAAGTCAaagTGCTGAGTGTGGGTGAAGGAGGCTATTGGGAAGGGACGGTTCGAGGACGCACAGGCTGGTTCCCCTCAGACTGCGTGGAGGAAGTTGCTCTCCGTAGCCTGGAATCTCGTTCAGAGAGCCGCAGTGAGAGAGCCAAGAGACTCTTCCGGCATTATACTGTTGGATCCTACGACAGCTTCGATGCGCCCAGtgaCTACATAATCAAGGAGAAGACAGTCCTCCTGCAGAAAAAAGACAATGAAGGTTTTGGCTTTGTGCTGAGAGGAGCCAAGGCTCAGACCCCTATAGAAGAGTTCACTCCCACCCCAGCCTTTCCAGCACTGCAGTACCTTGAGTCTGTCGACGAGGGAGGCGTGGCCTGGAGAGCTGGTCTGCGAATGGGAGACTTCCTTATAGAGGTGAATGGTCAGAATGTGGTTAAGGTGGGACACAGGCAGGTGGTCAATATGATCAGGCAAGGCGGTAACAGTCTCATGGTCAAGGTTGTCATGGTTACTCGAAATCCTGATATGGAGGAAGGGGTCAGAAAGAAAATCCCACAGCAGAGTAAAAGACTGAGCACACCGGCTATCGCTCTGCGCTCCAAATCCATGACATCAGAGCTGGAAGAGATGGAAGTTCCACACTGTCACTACCAGCACCCCCACTACAGGTAA

Function

symbol description
shank1 Predicted to be located in cytoplasm. Orthologous to human SHANK1 (SH3 and multiple ankyrin repeat domains 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-691 Predicted to be located in cytoplasm. Orthologous to human SHANK1 (SH3 and multiple ankyrin repeat domains 1).

Ensembl:

ensembl_id ENSDARG00000060539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051528 True 2865 mRNA 0.53 21 30714111 30861177

Neighbor

gene id symbol gene type direction distance location
XLOC_026439 NA coding downstream 17821 30694877 ~ 30696290 (-)
XLOC_026438 si:ch211-51c14.1 coding downstream 28710 30665195 ~ 30685401 (-)
XLOC_026437 syt3 coding downstream 88892 30515365 ~ 30625219 (-)
XLOC_026436 med25 coding downstream 226011 30454353 ~ 30488100 (-)
XLOC_026435 lrrc4ba coding downstream 280095 30369765 ~ 30434016 (-)
XLOC_026442 kmt5c coding upstream 7149 30868326 ~ 30909487 (-)
XLOC_026443 coro1a coding upstream 65187 30926364 ~ 30941362 (-)
XLOC_026444 paqr4a coding upstream 86787 30947964 ~ 30962646 (-)
XLOC_026445 si:dkeyp-71f10.5 coding upstream 137185 30998362 ~ 31019832 (-)
XLOC_026446 NA coding upstream 180775 31041952 ~ 31058290 (-)
XLOC_026432 NA non-coding downstream 512280 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 674962 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 690626 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 709182 29994895 ~ 30004929 (-)
XLOC_026450 NA non-coding upstream 232035 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 312956 31174133 ~ 31177209 (-)
XLOC_026457 NA non-coding upstream 650293 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 789076 31650253 ~ 31650711 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02680931_02718828 SHANK1 coding CI01000069 null 2680931 ~ 2718828 (-)