XLOC_026724 (snrnp25)


Basic Information

Item Value
gene id XLOC_026724
gene name snrnp25
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46377305 ~ 46379900 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052037
ATTCCGACAGCGtgtttataaaaatgaaatgtaaaaagaaaTGCTGGAACGGCTCAAATTGTTAAAGTTACAATTTTTAATACAATAAGCTTCTGCAAAAGGCGTACAGTTTTTTTACGAAATTGTAGTTATGTTAACTATTAACGCTTAGTGACTTTTTTATAAGTCTTGGATTTCTATACCCTCAAAACAAGACGTTTGAAGATAAAATGGACGAAATAAAGGACGAAACCGAGCTCAAAAAAGAGTTAGAGGAGAAAACTGTGGAAGATGAAATAAAAGAGGAGCACGAAGAGGAAGAAGACGAGGAGGCTCTTCCACACTCAGAAATTCTGGACATCTTTGAAGAAGGGCTGGCTCTCATAGTGCAGGACCCGCTTCTGTGTGACCTGCCCATTCAGGTCACACTGGAGGAGGTAAACTCTCAGGTGGCTCTGGAATATGGCCAGGCTATGACTGTTCGGGTTTGTAAGGCGGATGGAGAAGTCATGCCTATTGTGGTTGTGCAGTCTGCAACTGTTCTGGATCTCAAGAAAGCCATTCGCAGATATATGGAGCTGAAGCAACAGCGAGAAGGAGGTGTCAAGCACGTCAGCTGGAAATATGTGTGGAGGACATTTCATCTAGTTTTCAATGGGGAAAAATTAGAGGATGACAGAAGAAAACTGAAGGACTACGGGGTCAGGAACAGAGATGAAGTGACATTTTCAAAGAAACTGAGGAAGAAATGAACAGCTGCCACGTTTTTGGGCTAAAGTTGTAAATAGCAGAGAAATGTCAACGACAATTTCCAAAACAGAGAAAATGTTgcatagtttttttgtttgttttggcccaaaatgttttataaaaggtCAGTTCACCCCAAACAGACACTTTAGTCATCGTGTCATTCTAAAACCATTAGTTCTTTTAATCATCTTTGGAGGACAAACCAAGTTTTTAATGAAATCTGATAAATTTCTGTCCCTTAAATGAAA

Function

symbol description
snrnp25 Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP25 (small nuclear ribonucleoprotein U11/U12 subunit 25).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050417-179 Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. Orthologous to human SNRNP25 (small nuclear ribonucleoprotein U11/U12 subunit 25).

Ensembl:

ensembl_id ENSDARG00000020363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052037 True 980 mRNA 0.39 5 46377305 46379900

Neighbor

gene id symbol gene type direction distance location
XLOC_026723 CR450782.1 coding downstream 150295 46224589 ~ 46227010 (-)
XLOC_026722 NA coding downstream 159832 46153127 ~ 46217473 (-)
XLOC_026721 shisa9b coding downstream 262073 46043406 ~ 46115232 (-)
XLOC_026720 igfals coding downstream 529048 45845007 ~ 45848257 (-)
XLOC_026719 NA coding downstream 533605 45832077 ~ 45843700 (-)
XLOC_026725 cdip1 coding upstream 7960 46387860 ~ 46410387 (-)
XLOC_026726 NA coding upstream 82685 46462585 ~ 46463256 (-)
XLOC_026727 CR385086.1 coding upstream 377711 46757611 ~ 46762706 (-)
XLOC_026728 elavl3 coding upstream 420290 46800190 ~ 46818001 (-)
XLOC_026729 CR392045.1 coding upstream 539622 46919522 ~ 47105267 (-)
XLOC_026716 NA non-coding downstream 833854 45539786 ~ 45543451 (-)
XLOC_026709 NA non-coding downstream 2041452 44332747 ~ 44335853 (-)
XLOC_026731 NA non-coding upstream 750132 47130032 ~ 47131111 (-)
XLOC_026732 NA non-coding upstream 814838 47194738 ~ 47196960 (-)
XLOC_026736 NA non-coding upstream 1447302 47827202 ~ 47833114 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_00781088_00781355 CP033, SNRNP25 coding CI01000046 null 781088 ~ 781355 (+)