LOC110532762


Basic Information

Item Value
gene id LOC110532762
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69213749 ~ 69246132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988845.1
ACGCGTGTGGGCCCTTGAACCCAGCCTTCTTTTCCTCTTGTCGTGCCTTGCCTTCTGTATAAGCGGCCACACTTTCTCCCTGGCAGCCTTATCCTGCGGTATCAGAGCCTCTTTGATGCGGAGCTTCTTCTCGTCCAGAAACGTGTTCCCCTTGGTCATTTTCCAGATTATGTCCCTGTAATGGCGCATAGTTAAGCGCAAAATGATATTGCGAGGTGGTCCATCATATCTTCGTTTCCCAAGTCGATCACGTCTCTTAGCTTGTCTTTGATGCACGGAGTCACCTTTCCCAGGATATTAATGACTGCTTCCCTAATATTCCTCTACCTCTTTTACACCTTGGATTTTCAGATTCCACCTGCGAAAGTACCTTTGAAGTTCAGCTACATTCTCACAGGTCATTATTTGGGGGTTGCAGTTTCTAAAACTCATTCTCTAGGAACGTTATATTTTCCTCGTTTTCGCTCACAATTTTGTGAAGCTGACTGACAGTTTCTGACAACTGATCGATCTGGATTGGATTGCAGAGAAAAGTTCAGACATGGAAATGTCTTACTTTTTTCACCGGTGGATTTTTAATTGGAGTCTGAGGTAAAAAGGTCGCAGGACTTTCGTCCTGGTCTGTTTTGTTCTTTCTCTTGCTTGAGCTCGCAGCATCTTGTGTATCCATGCTGCTTTGGTTCTCGTCGTGGCCAGCTAGCATGTCTGCCGTCTTCTGTGAGGCTTGGATATTCCGTTTATTATTGTCTTTCTGTCGTGTTCTTCCAATTCAACTTGACAAAAACGAAATCTAAACTTATCCTATGCCGCTAAAACAAGTTGTAGTTAGTTTCTTTCAACAGTGATAGCCAATGAAAGACTGTTAAAACCACTTAACCCTCAATGTTGCTTTGACAAGCGAGAGAACACGCCCTCAGCGACGCCATCTTGGACATCCTGAGGAATCTACTTCGAGACTGTGGTGTGTTCATCTCAATACTTCAAAACTCCTAAACACGTCACAAATCTGGTACGTGGGTCTTTCCAGTGAGTTGGGGAAGAATGAGGAACCATGGCACAGTTTGAAAGCCTGATATGGACTATACCTATTATATTGGTGCTTGAAAGCATTGGATCCTGTATTGCATGTGGTAGAGCTGAGTACAGAATAAGGGATGAATGTTGTCCCATGTGTTCACCAGGAAATCGTGTACATAGGCATTGTACTGAATTCACCAGTACCAGCTGTGTGCCCTGTGTTGATTCTACTTTCCTTGATGAGCCCAATGGTCTCATAAAATGCAAAGTGTGTACCAACTGTGATCCAGGTTTGGGTTTGAAGGTAAAGCAGCCATGTACACCTTCATCAGACACTGTCTGTGGGACACTGGAGGGGTTCTACTGTCTAGACCCAACTAAGGATGGTTGTAGAGCAGCCCAGAGACACAGCGGCTGTGAACCTGGTCAATACATCAGTCACACAGCTGGTGTTTGTTTATTTATGAGAAGAAGAAAAATGGTGAGAACAAGACAAAACATAGCCCATCAAATACCTACACAGGCATCCCCAGATCAGGAAATATCAATGCTGCCTGGGGGAAACGaTTCGAGCCCCCGTCACAGTCAGGGAGTCAACGTTGTGTAATCTGGCTGTTCCAGCCATCTATAgtaaatcttaacactacatGTTAAATTTCATATTGTAGAATCTGGTTGGTATAAGGACCACTGTGTCTTTGTATCACATGGGGATGTTtgaaacttactcctcagcctgaactGTCCCCACTTGGGTCACCGAATAGCTAGCTTTTCATGTGGGCACCACTGGTAAGATGCTTCGGAAGGGTGGTCACATATCAGCTTCTGCCTACATCCTACAGACTGGTCTAAAATGGAAAGGAGCATGTGATGAGTATAAATTAGCTTCACATTGCTAGGAAACAGCTTCAGTAGCTGAGAACCCTCTGCTCTGCCTACAGACTGGTCTAAAATGGAAAGGAGCATGTGATGAGTATAAATTAGCTTCACCTTGCTAGGTAACAGCTTCAGTAGCTGAGAACCCTCTGCTCTTCCCAGGGGAAAGTCAAATGTGTGTATAACTTCAGGACCACAACATTTATGTCAGCCCAGACTATGGAACTCCAAATGGGACTTGAAAATATCTTGAGACACAGATTACTGGATACTGGTGCAGGATGCAGCTTTCGCTTGGGGAAGGTTCCCCAGAAATGAGAAACATCATCAAAAGGGTGGGAAGGAAAATTCAAATGGATAACTTTTCTACAATCTTTGCTTTATCTAATCCAATGCAATAATGTTAAGATATGATTGACGGTTGGTTGTATAATGAGTGTGGTCTCCTGTTTCGCCACACAGATGTTTACTATTGACTACTGAGGTATTCTGTATGTGAaactgtctgcaattgcattttattactAAAGCGTTTTATACCAAGGT
>XM_036988844.1
GCGTGTGGGCCCTTGAACCCAGCCTTCTTTTCCTCTTGTCGTGCCTTGCCTTCTGTATAAGCGGCCACACTTTCTCCCTGGCAGCCTTATCCTGCGGTATCAGAGCCTCTTTGATGCGGAGCTTCTTCTCGTCCAGAAACGTGTTCCCCTTGGTCATTTTCCAGATTATGTCCCTGTAATGGCGCATAGTTAAGCGCAAAATGATATTGCGAGGTGGTCCATCATATCTTCGTTTCCCAAGTCGATCACGTCTCTTAGCTTGTCTTTGATGCACGGAGTCACCTTTCCCAGGATATTAATGACTGCTTCCCTAATATTCCTCTACCTCTTTTACACCTTGGATTTTCAGATTCCACCTGCGAAAGTACCTTTGAAGTTCAGCTACATTCTCACAGGTCATTATTTGGGGGTTGCAGTTTCTAAAACTCATTCTCTAGGAACGTTATATTTTCCTCGTTTTCGCTCACAATTTTGTGAAGCTGACTGACAGTTTCTGACAACTGATCGATCTGGATTGGATTGCAGAGAAAAGTTCAGACATGGAAATGTCTTACTTTTTTCACCGGTGGATTTTTAATTGGAGTCTGAGGTAAAAAGGTCGCAGGACTTTCGTCCTGGTCTGTTTTGTTCTTTCTCTTGCTTGAGCTCGCAGCATCTTGTGTATCCATGCTGCTTTGGTTCTCGTCGTGGCCAGCTAGCATGTCTGCCGTCTTCTGTGAGGCTTGGATATTCCGTTTATTATTGTCTTTCTGTCGTGTTCTTCCAATTCAACTTGACAAAAACGAAATCTAAACTTATCCTATGCCGCTAAAACAAGTTGTAGTTAGTTTCTTTCAACAGTGATAGCCAATGAAAGACTGTTAAAACCACTTAACCCTCAATGTTGCTTTGACAAGCGAGAGAACACGCCCTCAGCGACGCCATCTTGGACATCCTGAGGAATCTACTTCGAGACTGTGGTGTGTTCATCTCAATACTTCAAAACTCCTAAACACGTCACAAATCTGGTACGTGGGTCTTTCCAGTGAGTTGGGGAAGAATGAGGAACCATGGCACAGTTTGAAAGCCTGATATGGACTATACCTATTATATTGGTGCTTGAAAGCATTGGATCCTGTATTGCATGTGGTAGAGCTGAGTACAGAATAAGGGATGAATGTTGTCCCATGTGTTCACCAGGAAATCGTGTACATAGGCATTGTACTGAATTCACCAGTACCAGCTGTGTGCCCTGTGTTGATTCTACTTTCCTTGATGAGCCCAATGGTCTCATAAAATGCAAAGTGTGTACCAACTGTGATCCAGGTTTGGGTTTGAAGGTAAAGCAGCCATGTACACCTTCATCAGACACTGTCTGTGGGACACTGGAGGGGTTCTACTGTCTAGACCCAACTAAGGATGGTTGTAGAGCAGCCCAGAGACACAGCGGCTGTGAACCTGGTCAATACATCAGTCACACAGGAACAACATCTACAGATACTGTGTGTGCTATCTGCCCTGATAAAACTCATTCAGATGGATCATTAACATCTTGTCAACCACATACAGAATGTGAATTCTTGGAAATTAAACCAGGAACTCCTTTTTCGGATTCAGAATGTGGAGTATCCTCACTTCCCACAGTTGAAATCATAGCTGGTGTTCTGATAGGTGTTCTATTTTTTCTGACCATAGCTGGTGTTTGTTTATTTATGAGAAGAAGAAAAATGGTGAGAACAAGACAAAACATAGCCCATCAAATACCTACACAGGCATCCCCAGATCAGGAAATATCAATGCTGCCTGGGGGAAACGaTTCGAGCCCCCGTCACAGCCAGTGACTCTGCATTCTGTAA
>XM_036988843.1
GCGTGTGGGCCCTTGAACCCAGCCTTCTTTTCCTCTTGTCGTGCCTTGCCTTCTGTATAAGCGGCCACACTTTCTCCCTGGCAGCCTTATCCTGCGGTATCAGAGCCTCTTTGATGCGGAGCTTCTTCTCGTCCAGAAACGTGTTCCCCTTGGTCATTTTCCAGATTATGTCCCTGTAATGGCGCATAGTTAAGCGCAAAATGATATTGCGAGGTGGTCCATCATATCTTCGTTTCCCAAGTCGATCACGTCTCTTAGCTTGTCTTTGATGCACGGAGTCACCTTTCCCAGGATATTAATGACTGCTTCCCTAATATTCCTCTACCTCTTTTACACCTTGGATTTTCAGATTCCACCTGCGAAAGTACCTTTGAAGTTCAGCTACATTCTCACAGGTCATTATTTGGGGGTTGCAGTTTCTAAAACTCATTCTCTAGGAACGTTATATTTTCCTCGTTTTCGCTCACAATTTTGTGAAGCTGACTGACAGTTTCTGACAACTGATCGATCTGGATTGGATTGCAGAGAAAAGTTCAGACATGGAAATGTCTTACTTTTTTCACCGGTGGATTTTTAATTGGAGTCTGAGGTAAAAAGGTCGCAGGACTTTCGTCCTGGTCTGTTTTGTTCTTTCTCTTGCTTGAGCTCGCAGCATCTTGTGTATCCATGCTGCTTTGGTTCTCGTCGTGGCCAGCTAGCATGTCTGCCGTCTTCTGTGAGGCTTGGATATTCCGTTTATTATTGTCTTTCTGTCGTGTTCTTCCAATTCAACTTGACAAAAACGAAATCTAAACTTATCCTATGCCGCTAAAACAAGTTGTAGTTAGTTTCTTTCAACAGTGATAGCCAATGAAAGACTGTTAAAACCACTTAACCCTCAATGTTGCTTTGACAAGCGAGAGAACACGCCCTCAGCGACGCCATCTTGGACATCCTGAGGAATCTACTTCGAGACTGTGGTGTGTTCATCTCAATACTTCAAAACTCCTAAACACGTCACAAATCTGGTACGTGGGTCTTTCCAGTGAGTTGGGGAAGAATGAGGAACCATGGCACAGTTTGAAAGCCTGATATGGACTATACCTATTATATTGGTGCTTGAAAGCATTGGATCCTGTATTGCATGTGGTAGAGCTGAGTACAGAATAAGGGATGAATGTTGTCCCATGTGTTCACCAGGAAATCGTGTACATAGGCATTGTACTGAATTCACCAGTACCAGCTGTGTGCCCTGTGTTGATTCTACTTTCCTTGATGAGCCCAATGGTCTCATAAAATGCAAAGTGTGTACCAACTGTGATCCAGGTTTGGGTTTGAAGGTAAAGCAGCCATGTACACCTTCATCAGACACTGTCTGTGGGACACTGGAGGGGTTCTACTGTCTAGACCCAACTAAGGATGGTTGTAGAGCAGCCCAGAGACACAGCGGCTGTGAACCTGGTCAATACATCAGTCACACAGGAACAACATCTACAGATACTGTGTGTGCTATCTGCCCTGATAAAACTCATTCAGATGGATCATTAACATCTTGTCAACCACATACAGAATGTGAATTCTTGGAAATTAAACCAGGAACTCCTTTTTCGGATTCAGAATGTGGAGTATCCTCACTTCCCACAGTTGAAATCATAGCTGGTGTTCTGATAGGTGTTCTATTTTTTCTGACCATAGCTGGTGTTTGTTTATTTATGAGAAGAAGAAAAATGGTGAGAACAAGACAAAACATAGCCCATCAAATACCTACACAGGCATCCCCAGATCAGGAAATATCAATGCTGCCTGGGGGAAACGaTTCGAGCCCCCGTCACAGTCAGGGAGTCAACGTTGTGTAATCTGGCTGTTCCAGCCATCTATAgtaaatcttaacactacatGTTAAATTTCATATTGTAGAATCTGGTTGGTATAAGGACCACTGTGTCTTTGTATCACATGGGGATGTTtgaaacttactcctcagcctgaactGTCCCCACTTGGGTCACCGAATAGCTAGCTTTTCATGTGGGCACCACTGGTAAGATGCTTCGGAAGGGTGGTCACATATCAGCTTCTGCCTACATCCTACAGACTGGTCTAAAATGGAAAGGAGCATGTGATGAGTATAAATTAGCTTCACATTGCTAGGAAACAGCTTCAGTAGCTGAGAACCCTCTGCTCTGCCTACAGACTGGTCTAAAATGGAAAGGAGCATGTGATGAGTATAAATTAGCTTCACCTTGCTAGGTAACAGCTTCAGTAGCTGAGAACCCTCTGCTCTTCCCAGGGGAAAGTCAAATGTGTGTATAACTTCAGGACCACAACATTTATGTCAGCCCAGACTATGGAACTCCAAATGGGACTTGAAAATATCTTGAGACACAGATTACTGGATACTGGTGCAGGATGCAGCTTTCGCTTGGGGAAGGTTCCCCAGAAATGAGAAACATCATCAAAAGGGTGGGAAGGAAAATTCAAATGGATAACTTTTCTACAATCTTTGCTTTATCTAATCCAATGCAATAATGTTAAGATATGATTGACGGTTGGTTGTATAATGAGTGTGGTCTCCTGTTTCGCCACACAGATGTTTACTATTGACTACTGAGGTATTCTGTATGTGAaactgtctgcaattgcattttattactAAAGCGTTTTATACCAAGGT

Function

NR:

description
tumor necrosis factor receptor superfamily member 14-like isoform X1

GO: NA

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988845.1 False 2442 mRNA 0.44 9 69213749 69246132
XM_036988844.1 False 1835 mRNA 0.44 10 69213751 69219112
XM_036988843.1 True 2653 mRNA 0.43 10 69213751 69246132

Neighbor

gene id symbol gene type direction distance location
LOC110532763 NA coding upstream 15925 69192510 ~ 69197824 (+)
LOC110532776 NA coding upstream 124812 69084924 ~ 69088937 (+)
LOC110531258 NA coding upstream 220677 68917184 ~ 68993072 (+)
LOC118966105 NA coding upstream 308223 68901391 ~ 68905526 (+)
LOC118966104 LOC106572753 coding upstream 318909 68890470 ~ 68894840 (+)
LOC110532770 LOC106572808 coding downstream 15024 69261156 ~ 69267394 (+)
LOC110532769 LOC106572807 coding downstream 41046 69287178 ~ 69335055 (+)
LOC118966108 NA coding downstream 55523 69301655 ~ 69302498 (+)
tnr5 tnr5 coding downstream 66193 69312325 ~ 70378374 (+)
LOC110532774 LOC106572817 coding downstream 80995 69327127 ~ 69367941 (+)
G835335 NA non-coding upstream 157809 69043733 ~ 69055940 (+)
G835320 NA non-coding upstream 185245 69025560 ~ 69028504 (+)
G835263 LOC106572754 non-coding upstream 201551 69005446 ~ 69012198 (+)
G835277 NA non-coding upstream 210788 69000325 ~ 69002961 (+)
G835400 NA non-coding downstream 32433 69278565 ~ 69278840 (+)
G835403 NA non-coding downstream 37195 69283327 ~ 69285421 (+)
G835404 NA non-coding downstream 41531 69287663 ~ 69299607 (+)
LOC110532768 tnr14 non-coding downstream 152377 69384397 ~ 69408200 (+)
LOC118965941 cyp2k5 other upstream 590910 68619611 ~ 68625512 (+)
LOC110532749 LOC106572763 other upstream 631339 68564136 ~ 68582410 (+)
LOC110531253 LOC106572751 other upstream 743240 68451084 ~ 68470509 (+)
G834235 NA other upstream 925224 68287215 ~ 68288525 (+)
G834228 NA other upstream 945341 68268037 ~ 68268408 (+)
G835268 LOC106572807 other downstream 41144 69287276 ~ 69367788 (+)
G836274 LOC106581772 other downstream 786860 70032992 ~ 70033227 (+)
G836374 NA other downstream 962546 70208678 ~ 70209635 (+)
LOC110532786 LOC106572841 other downstream 1508219 70754295 ~ 70759695 (+)

Expression


Co-expression Network