LOC118966104 (LOC106572753)


Basic Information

Item Value
gene id LOC118966104
gene name LOC106572753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68890470 ~ 68894840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988830.1
TACACCACAGTGATAGAGTGATCTACACCACTGCAAATCACGAAAACACTATGCGAAGCATGCACGCGGATACTTGTGTGCCCGCGTCTCCATCGAGGATCCTGGCAGTTGTTCTCCAACATGGCGACGTCAGCAGCTAAGAAGAAGGGGAATAAGACCCTATCCCTGACTAACTTCCTGGCAGAGGACAAGGGGGGTAATGCACCCCCAAGTTACCCCCCCACCAAGTCCACTAGCAGCTGGGCCGACGAGACAGATGACCTAGACACAGAGGtATCCACCTCCTGGCATACAGAGGAGGATATTTCCCGGGCCCCAGCCATCGACCGCTCCATCCTGCCCACAGCACCCCGTTCAGCCTGGGAGCCAAACGTTGGCCGCTCTTCTATTCCTCGCGGTCCCCCTTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTGACTGAGGACTCCATCATGGACTTCTTCAGGGGCGTGGGGatcagtgcAGTACATCTTCCTAGAGAACCCAGTAACCAAGACCGCTCAAAGGGGTTTGGCTATGCTGAGTTTGATGATGTGGAATCTCTCCTGAGTGCCTTGAGTCTAAACAAAGAGAACTTCGGAAACAGAAGGATCCTTGTGGACATTGCAGATTGGTCTTGTTGGATTTgacattttgaacattgagatagtAAAGACATGATAGATCAGACACATAGTATATTAAGGAGTGAGATCTGTAGAAAGAGAGTGGCTGTGGAATGTGCTGTGTGGACGGGAGGAGCTCAACGGATTGCTATTGGGGAGACGGATGGACATCTGTGGACTAGAaggaggaggggttgaggtcaggaagtgaggtcagatcccctgaaggTAAAGGTTACTAAAGGTTTACTACCCTTTTCCTGTGGAACCATAAGAtttaaggattggagagaaggaggagtgtcttaaGGGGGATGTATATAACTGTGATGGTGAGAAATGTTGGTCTGTCTGACCCTTTGAGCAGAATTAAatttggttaaagcttc
>XM_036988831.1
ACCACTGCAAATCACGAAAACACTATGCGAAGCATGCACGCGGATACTTGTGTGCCCGCGTCTCCATCGAGGATCCTGGCAGTTGTTCTCCAACATGGCGACGTCAGCTAAGAAGAAGGGGAATAAGACCCTATCCCTGACTAACTTCCTGGCAGAGGACAAGGGGGGTAATGCACCCCCAAGTTACCCCCCCACCAAGTCCACTAGCAGCTGGGCCGACGAGACAGATGACCTAGACACAGAGGtATCCACCTCCTGGCATACAGAGGAGGATATTTCCCGGGCCCCAGCCATCGACCGCTCCATCCTGCCCACAGCACCCCGTTCAGCCTGGGAGCCAAACGTTGGCCGCTCTTCTATTCCTCGCGGTCCCCCTTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTGACTGAGGACTCCATCATGGACTTCTTCAGGGGCGTGGGGatcagtgcAGTACATCTTCCTAGAGAACCCAGTAACCAAGACCGCTCAAAGGGGTTTGGCTATGCTGAGTTTGATGATGTGGAATCTCTCCTGAGTGCCTTGAGTCTAAACAAAGAGAACTTCGGAAACAGAAGGATCCTTGTGGACATTGCAGATTGGTCTTGTTGGATTTgacattttgaacattgagatagtAAAGACATGATAGATCAGACACATAGTATATTAAGGAGTGAGATCTGTAGAAAGAGAGTGGCTGTGGAATGTGCTGTGTGGACGGGAGGAGCTCAACGGATTGCTATTGGGGAGACGGATGGACATCTGTGGACTAGAaggaggaggggttgaggtcaggaagtgaggtcagatcccctgaaggTAAAGGTTACTAAAGGTTTACTACCCTTTTCCTGTGGAACCATAAGAtttaaggattggagagaaggaggagtgtcttaaGGGGGATGTATATAACTGTGATGGTGAGAAATGTTGGTCTGTCTGACCCTTTGAGCAGAATTAAatttggttaaagcttc
>XM_036988829.1
CGAAAACACTATGCGAAGCATGCACGCGGATACTTGTGTGCCCGCGTCTCCATCGAGGATCCTGGCAGTTGTTCTCCAACATGGCGACGTCAGGAGGGGCTGTATCGTGGCGGACGCTGCAGGGAGGGAGTGGGCATGGAACCATGTAAACATCGCACTTTACAGGCTAAGAAGAAGGGGAATAAGACCCTATCCCTGACTAACTTCCTGGCAGAGGACAAGGGGGGTAATGCACCCCCAAGTTACCCCCCCACCAAGTCCACTAGCAGCTGGGCCGACGAGACAGATGACCTAGACACAGAGGtATCCACCTCCTGGCATACAGAGGAGGATATTTCCCGGGCCCCAGCCATCGACCGCTCCATCCTGCCCACAGCACCCCGTTCAGCCTGGGAGCCAAACGTTGGCCGCTCTTCTATTCCTCGCGGTCCCCCTTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTGACTGAGGACTCCATCATGGACTTCTTCAGGGGCGTGGGGatcagtgcAGTACATCTTCCTAGAGAACCCAGTAACCAAGACCGCTCAAAGGGGTTTGGCTATGCTGAGTTTGATGATGTGGAATCTCTCCTGAGTGCCTTGAGTCTAAACAAAGAGAACTTCGGAAACAGAAGGATCCTTGTGGACATTGCAGATTGGTCTTGTTGGATTTgacattttgaacattgagatagtAAAGACATGATAGATCAGACACATAGTATATTAAGGAGTGAGATCTGTAGAAAGAGAGTGGCTGTGGAATGTGCTGTGTGGACGGGAGGAGCTCAACGGATTGCTATTGGGGAGACGGATGGACATCTGTGGACTAGAaggaggaggggttgaggtcaggaagtgaggtcagatcccctgaaggTAAAGGTTACTAAAGGTTTACTACCCTTTTCCTGTGGAACCATAAGAtttaaggattggagagaaggaggagtgtcttaaGGGGGATGTATATAACTGTGATGGTGAGAAATGTTGGTCTGTCTGACCCTTTGAGCAGAATTAAatttggttaaagcttc
>XM_036988828.1
GAAAACACTATGCGAAGCATGCACGCGGATACTTGTGTGCCCGCGTCTCCATCGAGGATCCTGGCAGTTGTTCTCCAACATGGCGACGTCAGGAGGGGCTGTATCGTGGCGGACGCTGCAGGGAGGGAGTGGGCATGGAACCATGTAAACATCGCACTTTACAGGCAGCTAAGAAGAAGGGGAATAAGACCCTATCCCTGACTAACTTCCTGGCAGAGGACAAGGGGGGTAATGCACCCCCAAGTTACCCCCCCACCAAGTCCACTAGCAGCTGGGCCGACGAGACAGATGACCTAGACACAGAGGtATCCACCTCCTGGCATACAGAGGAGGATATTTCCCGGGCCCCAGCCATCGACCGCTCCATCCTGCCCACAGCACCCCGTTCAGCCTGGGAGCCAAACGTTGGCCGCTCTTCTATTCCTCGCGGTCCCCCTTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTGACTGAGGACTCCATCATGGACTTCTTCAGGGGCGTGGGGatcagtgcAGTACATCTTCCTAGAGAACCCAGTAACCAAGACCGCTCAAAGGGGTTTGGCTATGCTGAGTTTGATGATGTGGAATCTCTCCTGAGTGCCTTGAGTCTAAACAAAGAGAACTTCGGAAACAGAAGGATCCTTGTGGACATTGCAGATTGGTCTTGTTGGATTTgacattttgaacattgagatagtAAAGACATGATAGATCAGACACATAGTATATTAAGGAGTGAGATCTGTAGAAAGAGAGTGGCTGTGGAATGTGCTGTGTGGACGGGAGGAGCTCAACGGATTGCTATTGGGGAGACGGATGGACATCTGTGGACTAGAaggaggaggggttgaggtcaggaagtgaggtcagatcccctgaaggTAAAGGTTACTAAAGGTTTACTACCCTTTTCCTGTGGAACCATAAGAtttaaggattggagagaaggaggagtgtcttaaGGGGGATGTATATAACTGTGATGGTGAGAAATGTTGGTCTGTCTGACCCTTTGAGCAGAATTAAatttggttaaagcttc

Function

NR:

description
LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988830.1 False 1019 mRNA 0.50 5 68890470 68894840
XM_036988831.1 False 990 mRNA 0.50 5 68890496 68894840
XM_036988829.1 False 1049 mRNA 0.51 6 68890510 68894840
XM_036988828.1 True 1051 mRNA 0.51 6 68890511 68894840

Neighbor

gene id symbol gene type direction distance location
LOC110532754 LOC106572760 coding upstream 25027 68862396 ~ 68865443 (+)
LOC100136778 LOC100136778 coding upstream 29384 68854564 ~ 68861086 (+)
LOC110532753 LOC106572761 coding upstream 125456 68740732 ~ 68765014 (+)
LOC110532752 NA coding upstream 179855 68707710 ~ 68710615 (+)
LOC118965941 cyp2k5 coding upstream 264958 68619611 ~ 68625512 (+)
LOC118966105 NA coding downstream 6551 68901391 ~ 68905526 (+)
LOC110531258 NA coding downstream 22344 68917184 ~ 68993072 (+)
LOC110532776 NA coding downstream 190084 69084924 ~ 69088937 (+)
LOC110532763 NA coding downstream 297670 69192510 ~ 69197824 (+)
LOC110532762 NA coding downstream 318909 69213749 ~ 69246132 (+)
G834962 NA non-coding upstream 1452 68888595 ~ 68889018 (+)
G834842 NA non-coding upstream 84189 68768613 ~ 68806281 (+)
G834892 NA non-coding upstream 124348 68765903 ~ 68766122 (+)
G834872 NA non-coding upstream 177814 68711965 ~ 68712656 (+)
G835251 NA non-coding downstream 17814 68912654 ~ 68914754 (+)
G835298 NA non-coding downstream 53325 68948165 ~ 68949338 (+)
G835277 NA non-coding downstream 105485 69000325 ~ 69002961 (+)
G835263 LOC106572754 non-coding downstream 110606 69005446 ~ 69012198 (+)
LOC110532749 LOC106572763 other upstream 308060 68564136 ~ 68582410 (+)
LOC110531253 LOC106572751 other upstream 419961 68451084 ~ 68470509 (+)
G834235 NA other upstream 601945 68287215 ~ 68288525 (+)
G834228 NA other upstream 622062 68268037 ~ 68268408 (+)
G835266 NA other downstream 344756 69239596 ~ 69244478 (+)
LOC110532770 LOC106572808 other downstream 366331 69261156 ~ 69267394 (+)
G835268 LOC106572807 other downstream 392436 69287276 ~ 69367788 (+)
G836274 LOC106581772 other downstream 1138152 70032992 ~ 70033227 (+)
G836374 NA other downstream 1313838 70208678 ~ 70209635 (+)

Expression


Co-expression Network