LOC110532752


Basic Information

Item Value
gene id LOC110532752
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68707710 ~ 68710615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474882.2
CtcttcactccccccccccctctccaaaacaACACCCAGGGGCGGCTAGTCATGGGAAAGCCCAGGCGCCATACCAGTGTCTGGACTTTAGCAGAGCTGACGAAGAGTTTTATAACAAAACAACAGAGGGAGGTCACttctagggctgtggcggtcattacattttgtcagccggttctTGTCATGGAAATAACTgctggtctcacggtaattgaccgttaatcaTAGTTTTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTCGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCAATTACCAAGTGTGCCAAACTGAATGCATGTTCTCTGCTTTACACTGAGTTTGTAATTTTATAACAGACTTTTTGCAAAACTGTAAAACATAACACACTGCTGTACACTCAGTTTGCAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACATTATTTTGCCAATTGCCTTTCCACATTGACACATGAAAACACTTTTAGATAACGAGTTAACTTACAAATCAGAGCTTAAGCACTATAAATAGGCCACAGGTAAACATTTGGATTGGACAACGATGGAGGCCAATATTGGACGGAGAGTAAGAGGGGTGAGAActagaggaggacgaggaggaggaagaagaggacgaggagGTGAAGaagtaagaggaggaggaggagagggaagaggtgaAGTAAGacagggagaagaagaggaggggaagaggaaggggagtcAGGTACGCAATAACTGATGAAATAGAGCGACTGTGGTTGACCATGTTGTCAACCATGGGATGAGCATGAGGGAGGCTGGGCAACAGGTTCAACCAAATCTGAGCCGCTATACTGTTGCAGGTATCATCCGGATATTTTGAAATGAGAACCGAACTGCAAGAAAACCAGTATCTGGTGGAAGAGGTCAACTGTTCACCCCAGAGCAGGAGACCCACATTGTAAATATAGCCACTGCAAATAACTGCATCAGAAtcagagaactgcaggaccacaATGGTAGATAACACCATAATCCTAAACatcaacagagtgagtctctgcaccgtctcgtctactgaaacgcAATATAATTAGGATGAAGCAGTTGTACAGAGTCCCTTTCGAAAGAAACTCAGACCGTGTAAAACAACTGAGatatgaacatgtgcagAGAGTCATGGAGCTAGAAGCAGATGCTACCGTCTCTTACGACCGTTAAGaccttctggacatcagaactgggattattCACCTCAAATTGAACgaggagttcttcttcaatgagtcggacgtgAGGGaaatactacagacacccgaacaggcccagatccctgtgattcgctggagaaggaaactgagattttgaggcaaaagatcagggtgccttgcgAGGATCAGGCAACGAGTTGCTAATCTACCCTTGCCTTCCgttctgctagctaacgttcaatcgctggaaaataaatgtgaGGAACTGAAAGAATATACAGTTTTTCTGTTCTTTTTTTTCTAgaacaaatgtttttgttttcttctacTGCGCTTTTGTTGTTTGAGTGTTAGAACATTTTGAGATTTTTTTTGTATTGATAGTGTGTTATGTTGGGAATACACATCCATACTTTACACATTTGgatacctgtgtgtatgtgtgtttactaCATGTATGACAACATTTTATTGCAAACTGCTATGCTCTGCACACAGAAAAAGTTAAAGCCACAAGTGTTTTTCCTTTATACTATCAGTGCATAGTTGGTGCTTCGTGTGCTTATTCAAATGAtggtttgtgtgtagtgtattgacgcaaaaacatttttttttaaagagttttGCAAGAATTGTTTGCTTTTGTAAGAGATGTATAATGTTTTGCTGGTTTGGTGTAAGGTTTTGTGATTAGTGTGTAGAGTTTTAAAGATAATGCCCAAGCAATCAGAAAAAACTGTAGCATAAAcatatttagcatctcctggcttccatgcATAGCATaaaagccactgatgcagacctttggaacatctacatttaaaaaaaaaaaaatctaataaatccatgtaatatagccgaCACCagcacaataaatccattatttattttagacaggtctaacgaaacatgatatgaaaaatatatatatttcagaagaacagaatagcatactgagttgtccttatgttaggtcctgatctggctatgccacaTGGCTGTGTGCTACACTAGTTCTAGTTAATTAGTTAATATAACTAGTTCATTCAGCACAACATATTTTCTTAGAATTCTGTGAAATTATTTTATACAAATACAATTGAAcacagctgaataaaatagaaaggatattttcttcAAAAAGATGATGGGAGCTGCACATGCAGCTATTCCGTGTTGAGCGGTTAAAAAAGAAATAGGTCCTCCTATTtacttcatttagagttatttatgctactttagttgtgatacaaatgttgggctataggTTTTGATTGTTAATacaaaagttgcatgaaaggca
>XR_002474881.2
ACTTTAGCTCAGCAAGATATAGTACTACTCTTTCTTTACGCCTTCACTGCTATAGCGTACTGTATGACatactgtaaaaatattgtaGAGGAAGACCAAAATAAAATGTCAGCCTGCTTTATTCTTCTAGGGCGGCTAGTCATGGGAAAGCCCAGGCGCCATACCAGTGTCTGGACTTTAGCAGAGCTGACGAAGAGTTTTATAACAAAACAACAGAGGGAGGTCACttctagggctgtggcggtcattacattttgtcagccggttctTGTCATGGAAATAACTgctggtctcacggtaattgaccgttaatcaTAGTTTTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTCGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCAATTACCAAGTGTGCCAAACTGAATGCATGTTCTCTGCTTTACACTGAGTTTGTAATTTTATAACAGACTTTTTGCAAAACTGTAAAACATAACACACTGCTGTACACTCAGTTTGCAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACATTATTTTGCCAATTGCCTTTCCACATTGACACATGAAAACACTTTTAGATAACGAGTTAACTTACAAATCAGAGCTTAAGCACTATAAATAGGCCACAGGTAAACATTTGGATTGGACAACGATGGAGGCCAATATTGGACGGAGAGTAAGAGGGGTGAGAActagaggaggacgaggaggaggaagaagaggacgaggagGTGAAGaagtaagaggaggaggaggagagggaagaggtgaAGTAAGacagggagaagaagaggaggggaagaggaaggggagtcAGGTACGCAATAACTGATGAAATAGAGCGACTGTGGTTGACCATGTTGTCAACCATGGGATGAGCATGAGGGAGGCTGGGCAACAGGTTCAACCAAATCTGAGCCGCTATACTGTTGCAGGTATCATCCGGATATTTTGAAATGAGAACCGAACTGCAAGAAAACCAGTATCTGGTGGAAGAGGTCAACTGTTCACCCCAGAGCAGGAGACCCACATTGTAAATATAGCCACTGCAAATAACTGCATCAGAAtcagagaactgcaggaccacaATGGTAGATAACACCATAATCCTAAACatcaacagagtgagtctctgcaccgtctcgtctactgaaacgcAATATAATTAGGATGAAGCAGTTGTACAGAGTCCCTTTCGAAAGAAACTCAGACCGTGTAAAACAACTGAGatatgaacatgtgcagAGAGTCATGGAGCTAGAAGCAGATGCTACCGTCTCTTACGACCGTTAAGaccttctggacatcagaactgggattattCACCTCAAATTGAACgaggagttcttcttcaatgagtcggacgtgAGGGaaatactacagacacccgaacaggcccagatccctgtgattcgctggagaaggaaactgagattttgaggcaaaagatcagggtgccttgcgAGGATCAGGCAACGAGTTGCTAATCTACCCTTGCCTTCCgttctgctagctaacgttcaatcgctggaaaataaatgtgaGGAACTGAAAGAATATACAGTTTTTCTGTTCTTTTTTTTCTAgaacaaatgtttttgttttcttctacTGCGCTTTTGTTGTTTGAGTGTTAGAACATTTTGAGATTTTTTTTGTATTGATAGTGTGTTATGTTGGGAATACACATCCATACTTTACACATTTGgatacctgtgtgtatgtgtgtttactaCATGTATGACAACATTTTATTGCAAACTGCTATGCTCTGCACACAGAAAAAGTTAAAGCCACAAGTGTTTTTCCTTTATACTATCAGTGCATAGTTGGTGCTTCGTGTGCTTATTCAAATGAtggtttgtgtgtagtgtattgacgcaaaaacatttttttttaaagagttttGCAAGAATTGTTTGCTTTTGTAAGAGATGTATAATGTTTTGCTGGTTTGGTGTAAGGTTTTGTGATTAGTGTGTAGAGTTTTAAAGATAATGCCCAAGCAATCAGAAAAAACTGTAGCATAAAcatatttagcatctcctggcttccatgcATAGCATaaaagccactgatgcagacctttggaacatctacatttaaaaaaaaaaaaatctaataaatccatgtaatatagccgaCACCagcacaataaatccattatttattttagacaggtctaacgaaacatgatatgaaaaatatatatatttcagaagaacagaatagcatactgagttgtccttatgttaggtcctgatctggctatgccacaTGGCTGTGTGCTACACTAGTTCTAGTTAATTAGTTAATATAACTAGTTCATTCAGCACAACATATTTTCTTAGAATTCTGTGAAATTATTTTATACAAATACAATTGAAcacagctgaataaaatagaaaggatattttcttcAAAAAGATGATGGGAGCTGCACATGCAGCTATTCCGTGTTGAGCGGTTAAAAAAGAAATAGGTCCTCCTATTtacttcatttagagttatttatgctactttagttgtgatacaaatgttgggctataggTTTTGATTGTTAATacaaaagttgcatgaaaggca
>TU949542
ctccaaaacaACACCCAGGGTAAGCAAACTTTAGCTCAGCAAGATATAGTACTACTCTTTCTTTACGCCTTCACTGCTATAGCGTACTGTATGACatactgtaaaaatattgtaGAGGAAGACCAAAATAAAATGTCAGCCTGCTTTATTCTTCTAGGGCGGCTAGTCATGGGAAAGCCCAGGCGCCATACCAGTGTCTGGACTTTAGCAGAGCTGACGAAGAGTTTTATAACAAAACAACAGAGGGAGGTCACttctagggctgtggcggtcattacattttgtcagccggttctTGTCATGGAAATAACTgctggtctcacggtaattgaccgttaatcaTAGTTTTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTCGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCAATTACCAAGTGTGCCAAACTGAATGCATGTTCTCTGCTTTACACTGAGTTTGTAATTTTATAACAGACTTTTTGCAAAACTGTAAAACATAACACACTGCTGTACACTCAGTTTGCAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACATTATTTTGCCAATTGCCTTTCCACATTGACACATGAAAACACTTTTAGATAACGAGTTAACTTACAAATCAGAGCTTAAGCACTATAAATAGGCCACAGGTAAACATTTGGATTGGACAACGATGGAGGCCAATATTGGACGGAGAGTAAGAGGGGTGAGAActagaggaggacgaggaggaggaagaagaggacgaggagGTGAAGaagtaagaggaggaggaggagagggaagaggtgaAGTAAGacagggagaagaagaggaggggaagaggaaggggagtcAGGTACGCAATAACTGATGAAATAGAGCGACTGTGGTTGACCATGTTGTCAACCATGGGATGAGCATGAGGGAGGCTGGGCAACAGGTTCAACCAAATCTGAGCCGCTATACTGTTGCAGGTATCATCCGGATATTTTGAAATGAGAACCGAACTGCAAGAAAACCAGTATCTGGTGGAAGAGGTCAACTGTTCACCCCAGAGCAGGAGACCCACATTGTAAATATAGCCACTGCAAATAACTGCATCAGAAtcagagaactgcaggaccacaATGGTAGATAACACCATAATCCTAAACatcaacagagtgagtctctgcaccgtctcgtctactgaaacgcAATATAATTAGGATGAAGCAGTTGTACAGAGTCCCTTTCGAAAGAAACTCAGACCGTGTAAAACAACTGAGatatgaacatgtgcagAGAGTCATGGAGCTAGAAGCAGATGCTACCGTCTCTTACGACCGTTAAGaccttctggacatcagaactgggattattCACCTCAAATTGAACgaggagttcttcttcaatgagtcggacgtgAGGGaaatactacagacacccgaacaggcccagatccctgtgattcgctggagaaggaaactgagattttgaggcaaaagatcagggtgccttgcgAGGATCAGGCAACGAGTTGCTAATCTACCCTTGCCTTCCgttctgctagctaacgttcaatcgctggaaaataaatgtga
>TU949544
ctccaaaacaACACCCAGGGGCGGCTAGTCATGGGAAAGCCCAGGCGCCATACCAGTGTCTGGACTTTAGCAGAGCTGACGAAGAGTTTTATAACAAAACAACAGAGGGAGGTCACttctagggctgtggcggtcattacattttgtcagccggttctTGTCATGGAAATAACTgctggtctcacggtaattgaccgttaatcaTAGTTTTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTCGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCAATTACCAAGTGTGCCAAACTGAATGCATGTTCTCTGCTTTACACTGAGTTTGTAATTTTATAACAGACTTTTTGCAAAACTGTAAAACATAACACACTGCTGTACACTCAGTTTGCAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACATTATTTTGCCAATTGCCTTTCCACATTGACACATGAAAACACTTTTAGATAACGAGTTAACTTACAAATCAGAGCTTAAGCACTATAAATAGGCCACAGGTAAACATTTGGATTGGACAACGATGGAGGCCAATATTGGACGGAGAGTAAGAGGGGTGAGAActagaggaggacgaggaggaggaagaagaggacgaggagGTGAAGaagtaagaggaggaggaggagagggaagaggtgaAGTAAGacagggagaagaagaggaggggaagaggaaggggagtcAGGTACGCAATAACTGATGAAATAGAGCGACTGTGGTTGACCATGTTGTCAACCATGGGATGAGCATGAGGGAGGCTGGGCAACAGGTTCAACCAAATCTGAGCCGCTATACTGTTGCAGGTATCATCCGGATATTTTGAAATGAGAACCGAACTGCAAGAAAACCAGTATCTGGTGGAAGAGGTCAACTGTTCACCCCAGAGCAGGAGACCCACATTGTAAATATAGCCACTGCAAATAACTGCATCAGAAtcagagaactgcaggaccacaATGGTAGATAACACCATAATCCTAAACatcaacagagtgagtctctgcaccgtctcgtctactgaaacgcAATATAATTAGGATGAAGCAGTTGTACAGAGTCCCTTTCGAAAGAAACTCAGACCGTGTAAAACAACTGAGatatgaacatgtgcagAGAGTCATGGAGCTAGAAGCAGATGCTACCGTCTCTTACGACCGTTAAGaccttctggacatcagaactgggattattCACCTCAAATTGAACgaggagttcttcttcaatgagtcggacgtgAGGGaaatactacagacacccgaacaggcccagatccctgtgattcgctggagaaggaaactgagattttgaggcaaaagatcagggtgccttgcgAGGATCAGGCAACGAGTTGCTAATCTACCCTTGCCTTCCgttctgctagctaacgttcaatcgctggaaaataaatgtga

Function

NR:

description
PREDICTED: uncharacterized protein LOC102075692

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474882.2 False 2536 mRNA 0.40 4 68707710 68710615
XR_002474881.2 False 2626 mRNA 0.39 3 68707758 68710615
TU949542 False 1611 lncRNA 0.43 3 68707731 68709573
TU949544 True 1473 lncRNA 0.44 4 68707731 68709573

Neighbor

gene id symbol gene type direction distance location
LOC118965941 cyp2k5 coding upstream 82198 68619611 ~ 68625512 (+)
LOC110532749 LOC106572763 coding upstream 126612 68564136 ~ 68582410 (+)
LOC110531253 LOC106572751 coding upstream 241102 68451084 ~ 68470509 (+)
LOC110532746 LOC106572736 coding upstream 360522 68327935 ~ 68347188 (+)
LOC110532744 p38b coding upstream 400043 68273401 ~ 68307667 (+)
LOC110532753 LOC106572761 coding downstream 30117 68740732 ~ 68765014 (+)
LOC100136778 LOC100136778 coding downstream 143949 68854564 ~ 68861086 (+)
LOC110532754 LOC106572760 coding downstream 151781 68862396 ~ 68865443 (+)
LOC118966104 LOC106572753 coding downstream 179855 68890470 ~ 68894840 (+)
LOC118966105 NA coding downstream 190776 68901391 ~ 68905526 (+)
G834865 LOC106456091 non-coding upstream 7554 68699877 ~ 68700156 (+)
G834864 NA non-coding upstream 9098 68698284 ~ 68698612 (+)
G834858 NA non-coding upstream 15139 68692126 ~ 68692571 (+)
G834855 NA non-coding upstream 17733 68689699 ~ 68689977 (+)
G834849 NA non-coding upstream 27164 68679985 ~ 68680546 (+)
G834872 NA non-coding downstream 1350 68711965 ~ 68712656 (+)
G834892 NA non-coding downstream 55288 68765903 ~ 68766122 (+)
G834842 NA non-coding downstream 57998 68768613 ~ 68806281 (+)
G834962 NA non-coding downstream 177980 68888595 ~ 68889018 (+)
G834235 NA other upstream 419185 68287215 ~ 68288525 (+)
G834228 NA other upstream 439302 68268037 ~ 68268408 (+)
G835266 NA other downstream 528981 69239596 ~ 69244478 (+)
LOC110532770 LOC106572808 other downstream 550556 69261156 ~ 69267394 (+)
G835268 LOC106572807 other downstream 576661 69287276 ~ 69367788 (+)
G836274 LOC106581772 other downstream 1322377 70032992 ~ 70033227 (+)
G836374 NA other downstream 1498063 70208678 ~ 70209635 (+)

Expression


Co-expression Network