RNA id: XR_002474882.2


Basic Information

Item Value
RNA id XR_002474882.2
length 2536
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110532752
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68707710 ~ 68710615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CtcttcactccccccccccctctccaaaacaACACCCAGGGGCGGCTAGTCATGGGAAAGCCCAGGCGCCATACCAGTGTCTGGACTTTAGCAGAGCTGACGAAGAGTTTTATAACAAAACAACAGAGGGAGGTCACttctagggctgtggcggtcattacattttgtcagccggttctTGTCATGGAAATAACTgctggtctcacggtaattgaccgttaatcaTAGTTTTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTCGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCAATTACCAAGTGTGCCAAACTGAATGCATGTTCTCTGCTTTACACTGAGTTTGTAATTTTATAACAGACTTTTTGCAAAACTGTAAAACATAACACACTGCTGTACACTCAGTTTGCAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACATTATTTTGCCAATTGCCTTTCCACATTGACACATGAAAACACTTTTAGATAACGAGTTAACTTACAAATCAGAGCTTAAGCACTATAAATAGGCCACAGGTAAACATTTGGATTGGACAACGATGGAGGCCAATATTGGACGGAGAGTAAGAGGGGTGAGAActagaggaggacgaggaggaggaagaagaggacgaggagGTGAAGaagtaagaggaggaggaggagagggaagaggtgaAGTAAGacagggagaagaagaggaggggaagaggaaggggagtcAGGTACGCAATAACTGATGAAATAGAGCGACTGTGGTTGACCATGTTGTCAACCATGGGATGAGCATGAGGGAGGCTGGGCAACAGGTTCAACCAAATCTGAGCCGCTATACTGTTGCAGGTATCATCCGGATATTTTGAAATGAGAACCGAACTGCAAGAAAACCAGTATCTGGTGGAAGAGGTCAACTGTTCACCCCAGAGCAGGAGACCCACATTGTAAATATAGCCACTGCAAATAACTGCATCAGAAtcagagaactgcaggaccacaATGGTAGATAACACCATAATCCTAAACatcaacagagtgagtctctgcaccgtctcgtctactgaaacgcAATATAATTAGGATGAAGCAGTTGTACAGAGTCCCTTTCGAAAGAAACTCAGACCGTGTAAAACAACTGAGatatgaacatgtgcagAGAGTCATGGAGCTAGAAGCAGATGCTACCGTCTCTTACGACCGTTAAGaccttctggacatcagaactgggattattCACCTCAAATTGAACgaggagttcttcttcaatgagtcggacgtgAGGGaaatactacagacacccgaacaggcccagatccctgtgattcgctggagaaggaaactgagattttgaggcaaaagatcagggtgccttgcgAGGATCAGGCAACGAGTTGCTAATCTACCCTTGCCTTCCgttctgctagctaacgttcaatcgctggaaaataaatgtgaGGAACTGAAAGAATATACAGTTTTTCTGTTCTTTTTTTTCTAgaacaaatgtttttgttttcttctacTGCGCTTTTGTTGTTTGAGTGTTAGAACATTTTGAGATTTTTTTTGTATTGATAGTGTGTTATGTTGGGAATACACATCCATACTTTACACATTTGgatacctgtgtgtatgtgtgtttactaCATGTATGACAACATTTTATTGCAAACTGCTATGCTCTGCACACAGAAAAAGTTAAAGCCACAAGTGTTTTTCCTTTATACTATCAGTGCATAGTTGGTGCTTCGTGTGCTTATTCAAATGAtggtttgtgtgtagtgtattgacgcaaaaacatttttttttaaagagttttGCAAGAATTGTTTGCTTTTGTAAGAGATGTATAATGTTTTGCTGGTTTGGTGTAAGGTTTTGTGATTAGTGTGTAGAGTTTTAAAGATAATGCCCAAGCAATCAGAAAAAACTGTAGCATAAAcatatttagcatctcctggcttccatgcATAGCATaaaagccactgatgcagacctttggaacatctacatttaaaaaaaaaaaaatctaataaatccatgtaatatagccgaCACCagcacaataaatccattatttattttagacaggtctaacgaaacatgatatgaaaaatatatatatttcagaagaacagaatagcatactgagttgtccttatgttaggtcctgatctggctatgccacaTGGCTGTGTGCTACACTAGTTCTAGTTAATTAGTTAATATAACTAGTTCATTCAGCACAACATATTTTCTTAGAATTCTGTGAAATTATTTTATACAAATACAATTGAAcacagctgaataaaatagaaaggatattttcttcAAAAAGATGATGGGAGCTGCACATGCAGCTATTCCGTGTTGAGCGGTTAAAAAAGAAATAGGTCCTCCTATTtacttcatttagagttatttatgctactttagttgtgatacaaatgttgggctataggTTTTGATTGTTAATacaaaagttgcatgaaaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU949537 lncRNA upstream 7554 68699877 ~ 68700156 (+) True G834865
TU949536 lncRNA upstream 9098 68698284 ~ 68698612 (+) True G834864
TU949530 lncRNA upstream 15139 68692126 ~ 68692571 (+) True G834858
TU949527 lncRNA upstream 17733 68689699 ~ 68689977 (+) True G834855
TU949521 lncRNA upstream 27164 68679985 ~ 68680546 (+) True G834849
TU949546 lncRNA downstream 1350 68711965 ~ 68712656 (+) True G834872
TU949564 lncRNA downstream 53981 68764596 ~ 68764953 (+) True LOC110532753
TU949567 lncRNA downstream 55288 68765903 ~ 68766122 (+) True G834892
TU949513 lncRNA downstream 57998 68768613 ~ 68806281 (+) True G834842
TU949642 lncRNA downstream 177980 68888595 ~ 68889018 (+) True G834962
XM_036986968.1 mRNA upstream 82198 68619611 ~ 68625512 (+) False LOC118965941
XM_021616870.2 mRNA upstream 126612 68564136 ~ 68581098 (+) False LOC110532749
XM_021616872.2 mRNA upstream 126612 68564136 ~ 68581098 (+) False LOC110532749
XM_036986967.1 mRNA upstream 241102 68451084 ~ 68466608 (+) False LOC110531253
XM_021616867.2 mRNA upstream 360522 68327935 ~ 68347188 (+) True LOC110532746
XM_021616877.2 mRNA downstream 30117 68740732 ~ 68765014 (+) False LOC110532753
NM_001124724.1 mRNA downstream 143949 68854564 ~ 68861086 (+) True LOC100136778
XM_021616878.2 mRNA downstream 151781 68862396 ~ 68865443 (+) True LOC110532754
XM_036988830.1 mRNA downstream 179855 68890470 ~ 68894840 (+) False LOC118966104
XM_036988831.1 mRNA downstream 179881 68890496 ~ 68894840 (+) False LOC118966104
TU949445 other upstream 84871 68619916 ~ 68622839 (+) True LOC118965941
TU949456 other upstream 125300 68578897 ~ 68582410 (+) True LOC110532749
TU949373 other upstream 237201 68466559 ~ 68470509 (+) False LOC110531253
TU949377 other upstream 237201 68466559 ~ 68470509 (+) True LOC110531253
TU948768 other upstream 419185 68287215 ~ 68288525 (+) False G834235
TU950021 other downstream 528981 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 529764 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 531599 69242214 ~ 69244478 (+) True G835266
TU950033 other downstream 550556 69261171 ~ 69266474 (+) True LOC110532770
TU950024 other downstream 576661 69287276 ~ 69367788 (+) True G835268

Expression Profile