RNA id: TU949377


Basic Information

Item Value
RNA id TU949377
length 3895
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC110531253
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68451084 ~ 68470509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAATACTGAACACAAATACTTCCACACACTTTGGAACTCTGTTTTAAAGTGCTTTAATGTCACCTGATGCGTTCACGTAAAGCTGAGTTGGTTCAGGATTCAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTATAGACATTGTGGCTTTTAAAggcaatttccgattgagccgacatacgcAGCGTTTACTGTGAATGGGATCTCTACGaacgtgggaacattgccttttaaAAACCCACAATGCCTAAAATCCCAAGATCGGTTTGAATCCCAGCCTTAGGTATCTGAAGACCACGGGAATGGATCTCAAGGCATGCATACTGTGTGAATTTCAACATCTTAACCAGACCGCCAACTCACAGACATGACAGGTTTACAAAAAGGTTTATTTTATGTGCATTCATTTAGCCTTTTACATTACTACGGGCTCTCTTTTGATAGAGTTCCCTCCCACCTTCTGTAGCCTATAAATGTGTAATAATCGCTCAAATTAAATCAAGATGATTGAATCATATCCAATATGGTAAACTAAAGTTATTCACATGAGTTGGCTGTCCTTGGTTGAAATACATGAGTTGGCTGTCATTGGTTGAAATACATGAGTTGGCTGTCAATGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCCTTTTTTGAAATGCACAATCCATTTGACACAAATAACAACGGATTACTATAGGTTTACGTTTACATTCATAACACATCAAAATGTGAAGACACCCTGATAGAAAAAGTAACCTTCTACTTCCTAGCGTAGTACTGTAACAAAGTCATCATTTGATGTTCCTATTTACAATGGATGGACATTCAAATCATATCCATTGCATTATACATCTGCATAGAGAGACAACATAGTATTTACATTAATTTATCTATTCACACGTGTTGTTCTAAACACTTAACTAAATCCCATGGCGTAAAACATTTAGCATTCTCTGTTTGAAGGAAATTAAGTTGATCAAAAGGAGAATGTTAAGTAACACAAGTGAAATGCATattaagatatatatattttcagcTGTAGTGGACAGTGACCAAACATCATCATCAAACACCAAGAACAAGGATTGTATAGTATAAGTCATGCGAACTCTCCTCTTCACTGCACAAGACAAGGTATGATCAAGAGACGCACAACTAActgtggcacacacacatacatccctAGCCACACTGACAAGACATGGCTTTGCAAAGTGAGGGATTGTAAGGCCACACAACAGTCCACATATTCAGTTAACCAGTATAGCATGAGCCAGGGTCAACCCAACCTCACCGTAAAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCCAGGGTCAACCTCACCTCACTTCACCGTACAGGAGCCAGGGTCAACCTAACCTCACTATACAGGAGCCAGGGTCAACCTAACCTCACCTCACCATACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACTTCACCTCACCTTACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCGTTATCAGCTCAACACATCTACCAGGAAATCATGTCAGTCTGTAGCATCCTCATACTGTACTGAGCTCAGAAGAGCCTCAATTAGCAGTGACCGCTAGGTGGTAGAGCTGAGCCACTCTACAGAACAGTTAGTTGAAAACATTCTTGAATTATTGCTGTATCTTAGTGATTACCTCAGTTTCCATTCCATCTGATACTGTGCAAATAACATTGAAAGTAGGATGTACAGTGTTCTCAACATTGGCAACGTGAGGGGGTGGTCAACTCCTactggtgtaaaaaaaaatgctttgCTGTATACATTTTAGGTTGGTGAACATTTTGAGATGGGGATTCTAGTATCCTGCGAGTTTTTTCTGACATGCTTTTTAATGAGGTCACAAAAAGGAGATTTAATGACAGTGTATAATTGATTGTAATGCTTTGATGTCAGAATCAGAACCATAGAAACTATGATCAGAACTAAGCCTGGAGCTTCAGGTGGCAACAGGGTTGCTAACCTGATTTCTCCAATGTATTATGACAACAAGAAATCCAAGAAATCTTTCCTCTTTCATTTCtgacaaacacacaaaaaataaaaacatcaacCAAACCGCTGGAGCCCTACTGTCACAGCCCttaacctcccctccctccctatctctcctcaACCTCCCCCTACCTCAtcggtctccctctccctcactgcaGGAGGGCACTGAGACTGGCATTTCTGTTCCAGCAGGGTGTAATCTGCGCCCAGCATCATCCCATGCTGGGCAGGATGGTATGATAGACAGGGGGGTGAGAATGACTGGCGCTAACGAACATGTGACCTGGGCCCCATGCCAGCCGTGTCAACACTCTCCAGGGCCACATGTTCAGTTGCCAAACATTTCAGATAGAAATGCCTTGAATAGAGCCAACATGATTGCTTGTTTTACATGTCGGAAAGGCATGCTTGTTCTACATAACATATTTCTATCCGAACGTTCCAAAACACTGTGTCCTGCTGAACCGACCCCTAGTTCATGACACAAGACAAGCTTCAGATAAatcatcaacaaaacaaacacataatAAAGTTTGCCCAGGATAACCACTTCATTCACCTCCCCAAAGACAGTCAACTGCACTCATGTGTTTTGGTGCTTGGTTTTTATAAATCACTCTGAGTCATTTAGTTTCAGAAAATCAAATGAAAGGCAACAGAAAACACCCATTGTGCATTATAACATGACactcagagagagggagtggatacAGTAATTGAAGAAGATTTTGTGTGGAGGTATGGGCTGAAAGCAATATGTCAAGTTTGTTTAGCAAATCAATAAATCAGCAATGATCATTGATTGAAGTTTTTTTACCTGTTCTCTCCAGTTGATGGCTAAGCTGCTTTGCATATACAGTGCCCtcagaaattatttttccacattttgttgtgttacaaagtggggttaaaatggatttaattgtcattttttatttatttatttatttaaattgactgatttccttatttgaactgtaactcagtaaaatctttgaaattgttgcatgttgcgtttatatttttgttcagtatattttctaCATCAATAACTTTCACAGACTGTAAACTCCTCCCTCTGCATATGCTTGTGAACGTTATAAGTGTACAGCATGGCATCACGGCATAGTCAGTTATATTTCTCCCTTCTCTTCAGAAGTGACGGTGCTTGTGGCTATTGCATTGGGTGCTCAATCTACCCGCTCCTACGTGTTCAATggcacaatgtatgaatacaTTCATTCTATGTGTAGATATAAACTGTGTTAAGCATGCGCAGTTGTAGGGGGAGGCGACATCGGCTTGCAATGAAATGGCAATGGCATAGGGTtaaaagagatgagagagatgtcaagtgtgtgtgtgtgtgtgagcatcaAATATGTGTAGACccaagggggggtgggggggggggggttgaaaggTGCTGTCCCACTACAGTGGGGGTGTCAGATGTGCCTGTGGAGGTCGGGCAGGTCTGAGGTGGTGAGGGCGGGCCGGGGCTCGATGCCTCTGGTCTTCATGAACCCCAGCAGCTGCTCAGGGATCTCAGCCAGCACGTCCTTAGCCAGCCGGGCCATGCTCAGGACCTGGTTCCCCGACCGGTCCATGTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU949347 lncRNA upstream 40351 68421719 ~ 68426208 (+) False G834695
TU949349 lncRNA upstream 41703 68421810 ~ 68424856 (+) True G834695
TU949340 lncRNA upstream 45813 68417383 ~ 68420746 (+) False G834694
TU949342 lncRNA upstream 46167 68417559 ~ 68420392 (+) True G834694
TU948802 lncRNA upstream 112134 68354097 ~ 68354425 (+) True G834261
TU949457 lncRNA downstream 95695 68566204 ~ 68566414 (+) True G834790
TU949458 lncRNA downstream 97610 68568119 ~ 68568321 (+) True G834791
TU949453 lncRNA downstream 104205 68574714 ~ 68576558 (+) False LOC110532749
TU949486 lncRNA downstream 178291 68648800 ~ 68649134 (+) True G834819
TU949490 lncRNA downstream 184668 68655177 ~ 68656837 (+) True G834823
XM_021616867.2 mRNA upstream 119371 68327935 ~ 68347188 (+) True LOC110532746
XM_021616865.2 mRNA upstream 158892 68273401 ~ 68307667 (+) False LOC110532744
XM_021616866.2 mRNA upstream 158892 68273401 ~ 68307667 (+) True LOC110532744
XR_005053462.1 mRNA upstream 207251 68258967 ~ 68259308 (+) False LOC118966196
LOC110531252 mRNA upstream 207817 68257720 ~ 68258742 (+) True LOC110531252
XM_021616870.2 mRNA downstream 93627 68564136 ~ 68581098 (+) False LOC110532749
XM_021616872.2 mRNA downstream 93627 68564136 ~ 68581098 (+) False LOC110532749
XM_036986968.1 mRNA downstream 149102 68619611 ~ 68625512 (+) False LOC118965941
XR_002474882.2 mRNA downstream 237201 68707710 ~ 68710615 (+) False LOC110532752
XR_002474881.2 mRNA downstream 237249 68707758 ~ 68710615 (+) False LOC110532752
TU948768 other upstream 178034 68287215 ~ 68288525 (+) False G834235
TU948760 other upstream 198151 68268037 ~ 68268408 (+) True G834228
TU948716 other upstream 247618 68217078 ~ 68218941 (+) False fance
TU948718 other upstream 247618 68217078 ~ 68218941 (+) True fance
TU948601 other upstream 417337 68048913 ~ 68049222 (+) True G834099
TU949456 other downstream 108388 68578897 ~ 68582410 (+) True LOC110532749
TU949445 other downstream 149407 68619916 ~ 68622839 (+) True LOC118965941
TU950021 other downstream 769087 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 769870 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 771705 69242214 ~ 69244478 (+) True G835266

Expression Profile