fance (fance)


Basic Information

Item Value
gene id fance
gene name fance
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68213202 ~ 68218960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616861.2
CCTCATGTTACAAGTTCACGTCAGGAAGAGGGTGGTGAAAACGTAAACAAAGCATGACATTTTGTATCGCTGGTTAGTTGGAGGAAAAAAACAACATATTACGCTTATTTTAGGCCGTTTCTTGTTATCCATAAGACGACCATGGACACAAATACTTTGTTGCTCCGGTTTGATGGACGCTCCCGGTTGCTGCTTCGTTCTTTACTATCGGGAGCTACTGGTGCCCGTCGAGGTCTGTGGGTGTTCCAGCGGCAGCGACGGTCAGACCCGGACCGCTGCCTACACACCTGTCTCGAGACTCTTTGCCAGCAGGAAATATGCCTGAACAGTGATGCTCAGACCCTGACAACCAAACCACTCGTGTGCCTATTTCCAGTTGCCTTCCAACGGAGCCTCGTGtccttcctccatctcacccACCCTTTGCATCCCCGGACCAGTGTCCTTCACCTGCTAGACTGCCTCAGCCAGGGGGAGCATGCCCCAAACCCCTGGGTGTCTGCCCTAGTCGTACAGCTCCGGAGAGACCTGGGAGCCCCTGGGGGGAAGGAGCCTCTAATCACCCCCCAGTGCAGAGAAAGACTAAGGGGACTATGTGAGCGTCTGagggatagtggtggtggtgatgataaaGCAACAGGATGGGCCTTGTGTTTAGGTGGACCAATAGAGCCACAACTGTCTTCATCCTCACAGGGTGGGCTAGATGTGGTTCCGAAGAGGAAGAGCAGCTGTGTTGATCTGGACTCAGAACCTGAGGACGACGCCGGACAGCAGCGTAAGAGGATGAGGATAAGTCTCTCTCCTGTGGACACTGAGAGGAGTTGTAGCAGTATGGAGTATGTGGTGGGAACGGAGGGTTTGAAGGATGAGATGGAGACGGACCGGGTGGTTGGTGTCATCCCAGAACCAGCTGTGGAACCGCAGCCAGCAGCAGGGAGTCCAAGTGATGCCCTGCCTGAGAATGTAAAGGCTTCTATCCCTCAAATCAAGGAAATGTTGGAAAGTGAGATGGAGTGGGACCAGAGCTCAGTGGATATCTTCAAGGTGCTGAACGACTGTGACCCCTCCCAGGTAGAGATCTTATGTAGGATGCTGAGTTTGTCTGAGATGCCAGAACAGACCCTACCTCAGCTCTGTAGCTGCCTGCTAGAACTCTCTCCTGATCTCAGTCACAGCACAGCAGCCACACTCATCAAGAGTCTCCTGCTGGGAAAGGTTCTGTCCCTTTCTGAACCTGCCTCACGCTGTCTAGTCACGGCTGTGACGTCACTATGCAGTCGCTACCCCAGGCCAACCTGCCACGCTCTGATTGGACCAGTCCTGGAGGAAGGGCAGACAGGCAGTGCACAGGCTGAGCTGCTCAACAGATTGATAGAAGACTGCCTGGATCCCCACTTCAGACTGCTGGTGTTTCAAATGACAATCAAAGGGATTTGGTGTGAAGGACTGCTGTCTGTCATTCATGCCCTGCTGGACAAGAAGCTGGAGCTGAATGAAGAGCTGTTCACACTCTTCACTGACCAGCTAAGCTCCCAGGCACCTCACTTCACCAAGTCCATGAAGTATGCCAAGATGATGCTCACTGTGCTGACCAAGTATAACACGCATGTAACTGTGGCTCACAAACGCACACTGTCCTGCTGCTTGTCCTCCAATGAGACATTCTTGAAGAAGTCTCTTCAAGCTGCCCTGAAGAGAATCAAACATTCATGAAATACTGTCTGAATCACAATACTGTTAAACTATTAAATTCATTATAATGACTGATTACAGTAAATGGTAGGGTATTTTTAAAGTCATTTTTACTAAAATGTTATGTCAGCTGTGTTTAAAACAAATTACAAGTCAGACGTTTGTTGTTTCATATTGATCTAATGTAAAAATTCTGGAATTCTGCAAGAACTTGCATAGCATACCTGTAAACCTGTATGTataaacaatgttgcaaatgtttggaatgcagttttaaccaatcagcatttaaccaatcagcatttagACCCACTAGTTGAAATAAAAGCCAACATGCACAAAAATA
>TU948716
ggggtctgaatactttccgaaggcactgtacatctaaATCTGGGATGTATCATCAGGCAGTGCACAGGCTGAGCTGCTCAACAGATTGATAGAAGACTGCCTGGATCCCCACTTCAGACTGCTGGTGTTTCAGTAAGACAAACCAACCCATTGGGCGTAATGGATCTAACAACTAGTGAAGTGTTCTGGCTGTATTGATTACATGTATTTTAATACAACGTCTTATACAGTCTCATAAGATCTTCTTTTGTCCAGAATGACAATCAAAGGGATTTGGTGTGAAGGACTGCTGTCTGTCATTCATGCCCTGCTGGACAAGAAGCTGGAGCTGAATGAAGAGCTGTTCACACTCTTCACTGACCAGCTAAGCTCCCAGGCACCTCACTTCACCAAGTCCATGAAGTATGCCAAGATGATGCTCACTGTGCTGACCAAGTATAACACGCATGTAACTGTGGCTCACAAACGCACACTGTCCTGCTGCTTGTCCTCCAATGAGACATTCTTGAAGAAGTCTCTTCAAGCTGCCCTGAAGAGAATCAAACATTCATGAAATACTGTCTGAATCACAATACTGTTAAACTATTAAATTCATTATAATGACTGATTACAGTAAATGGTAGGGTATTTTTAAAGTCATTTTTACTAAAATGTTATGTCAGCTGTGTTTAAAACAAATTACAAGTCAGACGTTTGTTGTTTCATATTGATCTAATGTAAAAATTCTGGAATTCTGCAAGAACTTGCATAGCATACCTGTAAACCTGTATGTataaacaatgttgcaaatgtttggaatgcagttttaaccaatcagcatttaaccaatcagcatttagACCCACTAGTTGAAATAAAA
>TU948718
ggggtctgaatactttccgaaggcactgtacatctaaATCTGGGATGTATCATCAGGCAGTGCACAGGCTGAGCTGCTCAACAGATTGATAGAAGACTGCCTGGATCCCCACTTCAGACTGCTGGTGTTTCAAATGACAATCAAAGGGATTTGGTGTGAAGGACTGCTGTCTGTCATTCATGCCCTGCTGGACAAGAAGCTGGAGCTGAATGAAGAGCTGTTCACACTCTTCACTGACCAGCTAAGCTCCCAGGCACCTCACTTCACCAAGTCCATGAAGTATGCCAAGATGATGCTCACTGTGCTGACCAAGTATAACACGCATGTAACTGTGGCTCACAAACGCACACTGTCCTGCTGCTTGTCCTCCAATGAGACATTCTTGAAGAAGTCTCTTCAAGCTGCCCTGAAGAGAATCAAACATTCATGAAATACTGTCTGAATCACAATACTGTTAAACTATTAAATTCATTATAATGACTGATTACAGTAAATGGTAGGGTATTTTTAAAGTCATTTTTACTAAAATGTTATGTCAGCTGTGTTTAAAACAAATTACAAGTCAGACGTTTGTTGTTTCATATTGATCTAATGTAAAAATTCTGGAATTCTGCAAGAACTTGCATAGCATACCTGTAAACCTGTATGTataaacaatgttgcaaatgtttggaatgcagttttaaccaatcagcatttaaccaatcagcatttagACCCACTAGTTGAAATAAAA

Function

symbol description
fance Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Is expressed in central nervous system and lens. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group E. Orthologous to human FANCE (FA complementation group E).

NR:

description
Fanconi anemia group E protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616861.2 False 2041 mRNA 0.49 10 68213202 68218960
TU948716 False 859 TUCP 0.40 3 68217078 68218941
TU948718 True 736 TUCP 0.40 4 68217078 68218941

Neighbor

gene id symbol gene type direction distance location
LOC110533037 NA coding upstream 876 68210179 ~ 68212326 (+)
LOC110532736 LOC106572735 coding upstream 102097 68099693 ~ 68111105 (+)
LOC118965940 LOC106572726 coding upstream 278685 67922657 ~ 67934517 (+)
LOC110533035 LOC106572734 coding upstream 301976 67905031 ~ 67911226 (+)
LOC110533034 LOC106572723 coding upstream 440366 67768340 ~ 67772836 (+)
LOC110531252 NA coding downstream 38760 68257720 ~ 68258742 (+)
LOC118966196 NA coding downstream 40007 68258913 ~ 68259946 (+)
LOC110532744 p38b coding downstream 54441 68273401 ~ 68307667 (+)
LOC110532746 LOC106572736 coding downstream 108975 68327935 ~ 68347188 (+)
LOC110531253 LOC106572751 coding downstream 232124 68451084 ~ 68470509 (+)
G834184 NA non-coding upstream 17655 68194344 ~ 68195547 (+)
G834185 LOC106566995 non-coding upstream 20896 68191899 ~ 68192306 (+)
G834178 NA non-coding upstream 29895 68182503 ~ 68183307 (+)
G834142 NA non-coding upstream 61447 68151265 ~ 68151755 (+)
G834159 LOC106572729 non-coding upstream 62192 68138811 ~ 68151010 (+)
G834221 NA non-coding downstream 36920 68255880 ~ 68256134 (+)
G834225 NA non-coding downstream 41106 68260066 ~ 68260406 (+)
G834211 NA non-coding downstream 45037 68263997 ~ 68264627 (+)
G834235 NA non-coding downstream 68255 68287215 ~ 68288525 (+)
G834099 NA other upstream 163980 68048913 ~ 68049222 (+)
G833906 LOC100194703 other upstream 591836 67620878 ~ 67621366 (+)
G833541 NA other upstream 999318 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 1278715 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 1391563 66814464 ~ 66821639 (+)
G834228 NA other downstream 49077 68268037 ~ 68268408 (+)
LOC110532749 LOC106572763 other downstream 359937 68564136 ~ 68582410 (+)
LOC118965941 cyp2k5 other downstream 400956 68619611 ~ 68625512 (+)

Expression


Co-expression Network