LOC118966196


Basic Information

Item Value
gene id LOC118966196
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68258913 ~ 68259946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053462.1
GTTTGACTGGtggcgtgtgtttgtgtgagcgaATGAATGCGAGAGAGAATGATTGTTTTATGTCTGTAATGTTTCATGTCTTAGTCTAGCGACCAAAAAAAAACTACACAGTGATCTTATTTGATCTGATCGGGGTTGGGCCTTGCTCCGATTCGGAAATGATAGGACCCGACATGCGAGCCCCTGAGGCCATGAGCATGAAGCTTCCACTAACTTCAGGGCCTCCACAAGAAATTGTGGTCAGAAGTGATGACTCGATCAGATATACTAGGTCCGAGGAGATTTGTGGTTTTACCTCATTCTCCACACCGGCCAATGAGTATAACAGCGATTCTGATCTGC
>TU948756
GATTCCTTGCGCTCTATAAATTCCATAACTCGGAAACGGAGCCATTCTTGTTTTGTTTGACTGGtggcgtgtgtttgtgtgagcgaATGAATGCGAGAGAGAATGATTGTTTTATGTCTGTAATGTTTCATGTCTTAGTCTAGCGACCAAAAAAAAACTACACAGTGATCTTATTTGATCTGATCGGGGTTGGGCCTTGCTCCGATTCGGAAATGATAGGACCCGACATGCGAGCCCCTGAGGCCATGAGCATGAAGCTTCCACTAACTTCAGGGCCTCCACAAGAAATTGTGGTCAGAAGTGATGACTCGATCAGATATACTAGGTCCGAGGAGATTTGTGGTTTTACCTCATTCTCCACACCGGCCAATGAGTATAACAGCGATTCTGATCTGCCATAAATTCGATAATTGTGCCCAGGTGTAAGAAGCTGCCTGTATTTGGCTGGCTAGCTACtaagctaacgttggctaacGCTAACAAACAGCCAGGTAATGAGCCAATGACAATGGCAGTAAAGTCGTTTTGGAGAGAAGTGGGCAAATTTGTAGTTTCATAGATATTCGTTttgtggtcctgctgctggtcaCTTCAAAAGAAACCATGCTCGTTAAACACTTTCTGCTCAATGGTCATCCAGTCTAACATGTCATTTGACATGGTTCGTTTTTCTTGGGGGGTAGATAGATAGTAGCTTCCGTCAATGTAATTGTCCGCATTTTCAATCTcccatgtattttatttttttatgtgtgtgtatgtatatgtagcgTGGTTCGTTCTGCGTTGTGTACTTTTAATTAGgaccttgacacaactgtaggtcTGCTGATTTGCCCTGCCCACGAAGAGACGACACACAATATTTTTGCCTTTTAGCACTTTTACAATCACGTGTATGTACAATATTGATATGAAAAAGTGTTTGTACACCAAAAATAACATTAGCTAtgcagctgtaaaaaaaaaaaaaagcaattttaAAGCACACGGAattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053462.1 False 342 mRNA 0.46 1 68258967 68259308
TU948756 True 1000 lncRNA 0.41 2 68258913 68259946

Neighbor

gene id symbol gene type direction distance location
LOC110531252 NA coding upstream 225 68257720 ~ 68258742 (+)
fance fance coding upstream 40007 68213202 ~ 68218960 (+)
LOC110533037 NA coding upstream 46641 68210179 ~ 68212326 (+)
LOC110532736 LOC106572735 coding upstream 147862 68099693 ~ 68111105 (+)
LOC118965940 LOC106572726 coding upstream 324450 67922657 ~ 67934517 (+)
LOC110532744 p38b coding downstream 14093 68273401 ~ 68307667 (+)
LOC110532746 LOC106572736 coding downstream 68627 68327935 ~ 68347188 (+)
LOC110531253 LOC106572751 coding downstream 191776 68451084 ~ 68470509 (+)
LOC110532749 LOC106572763 coding downstream 304828 68564136 ~ 68582410 (+)
LOC118965941 cyp2k5 coding downstream 360303 68619611 ~ 68625512 (+)
G834221 NA non-coding upstream 2833 68255880 ~ 68256134 (+)
G834184 NA non-coding upstream 63420 68194344 ~ 68195547 (+)
G834185 LOC106566995 non-coding upstream 66661 68191899 ~ 68192306 (+)
G834178 NA non-coding upstream 75660 68182503 ~ 68183307 (+)
G834142 NA non-coding upstream 107212 68151265 ~ 68151755 (+)
G834225 NA non-coding downstream 758 68260066 ~ 68260406 (+)
G834211 NA non-coding downstream 4689 68263997 ~ 68264627 (+)
G834235 NA non-coding downstream 27907 68287215 ~ 68288525 (+)
G834215 LOC106572737 non-coding downstream 31509 68290817 ~ 68291844 (+)
G834240 NA non-coding downstream 59289 68318597 ~ 68318891 (+)
G834099 NA other upstream 209745 68048913 ~ 68049222 (+)
G833906 LOC100194703 other upstream 637601 67620878 ~ 67621366 (+)
G833541 NA other upstream 1045083 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 1324480 66931688 ~ 66934487 (+)
G834228 NA other downstream 8729 68268037 ~ 68268408 (+)

Expression


Co-expression Network