RNA id: XM_021616877.2


Basic Information

Item Value
RNA id XM_021616877.2
length 4779
RNA type mRNA
GC content 0.39
exon number 12
gene id LOC110532753
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68740732 ~ 68765014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gAGCTCTGAAATCGTAGTAGATAACCAGAGTGAAATTACGAACGCACCCTCAGGGTGGGCGTCTCCCAGCTACCTTTGCTTACCTGTCATTTCCAAATCTTAAAGCGATTACAGATTTCCAATAGGTACCGCACTGGTTTGAACTAAAGGGACATTTTGTATTGACAAAATGGAATCGCCCGTGAAGAAAGGTTTCCTTAGACTGGAAATACAGAAAACAACATGGGAGGTTCCGGAGCAATATACCACACTGAAAGCTGTTGGCTCAGGTGCTTACGGGACAGTATGTTCTGCTATTGACCAGCAGACCAAGGAGAAGGTGGCCATTAAGAAGCTCTATCGTCCATTTCAGTCGTTGATCCATGCTAAACGGGCCTACCGGGAACTACGACTGTTGCGGCacatccagcatgacaatGTGATCTGCCTCCTTAATGTCTTCACACCTGATTTCTCCCTGGAGAAATTCCAGACATTTTACATGGTGATGCCCTTCGTTGCTGAGGATCTCGGTAACATCatgaagaggaggagattgacTGATCGCGTCATTGTTTACCTCTTCTACCAGCTTCTATGTGGCCTCAAGTATATCCATTCTGCAGGGATCATCCATCGGGACCTAAAACCTGGCAACCTCGCCGTGAACGATAACTGTGAATTGAAGATCCTGGACTTTGGTCTAGCGAGACATGCAGAGAGTGAGATGACGGGCTATGTGGTGACACGCTGGTACAGGTCACCAGAGGTCATCTTCAACTGGATGCACTATAGCCAGTCAGtGGACTTGTGGTCAGCAGGCTGCATCTTAGCTGAGATGATCACAGGCCAGGTTCTGTTCCCAGGCAAAGACAGCATTGACCAGTTGAAGAAGATCCTCCACGTGACAGGAACACCACCGTCCTCCCTGCTGCAGAAGATGCAGAGCaaagatGCTCGTTCATATGTGCAGGGTCTCCCTATCCAAAAGAAGAAAAACTTTAAGGAAGTCTTTCCCTCCTTGGATGTAAATGCGGTGGATCTGCTGGACAGCATACTGCTGCTGGACCCAGACACCAGGATGACAGCTAAAGAGGGCCTCTCACACCCCTACCTCTCTGAGTTCCATGATCCAgaatctgaacccgactccccgCCGTACGACGACTCCTTTGAAAGCATGGAGCTTGACGTGGGAGAGTGGAGTAGTCTGATCCACATGGAGATTATGACTTTTGACCCCAGAAACCCCAGTGCCACTGCAATGTAGCGGACAGACACAACAGAACACGGGCTCCCCCATGGCTCCCCCATTGCTCCATCTTATAAAAAGCATCACATTTCACAACATGGTTTCATGACTTCATGAAACATGATACTGGAAAGAATGGCGCCAAAGGAGATGGCTGTCTTTTTACGATCCCATAACTAATTGTGCGATTGTTtaaaagcattgttggttaagggcttgtaagtaagcatttcacagtgttgtattcggcgcatgtgacaaatacaatttgatttgatttgctatgTCATCATTTTTATGGATCCCTCGTGTTTTAAGGGTAGGTCATGGTTTTAACTTGTTTTAAGGTATACATTTTCAGAATGCTTCGTAAAAAATGAACATGAATGATGTACAACCTTTTAATATATCAGTAGTATTATCATATTAAATATAGTAACGTGGTAATCAACCACACCATTTGCATGTTTATCCAATTGGCTACAATCTATGTGTGAACAATGTTTTTATCATGACTGAGTAAAACCTCATACCTCAAATCAATCTCATCTATGAACACATTTTCATCTCTGACTCAATTAGCATTTTCCAAAATTAAGCACGTTTTGGTATCTTAACTGAAAAATTATGTTTGATGCCAGAAAACTAAATCTCAATCAATAGATCCACATAGTGTACAGTAGACGGCACATGTTCAGTGTAATGTATAATGTTCTTATGCTGCCCTTTTTTTTTTGTGAACGGGTCAGATAGGTCATCATTTCAGTTCTGTTACAGCAATGGtaataagtaaaaaatactttaaggtactacttaagtcattttttgggaGGTATCTGTAGtttgctatttatatttttgacagctTTTACCTTCActacactacattcctaaagaaaataacgtaccttttattccatacatttttcctgacacccaaaagtacttttcAGAATTTTCAGGCAGGACAgcaatatggtccaattcacgcgtCTATCAATATAACGCATTgtcatccctaatgcctctgatcttACAGACTCACTGCAAATActgcatttgtaaattatgtctgagtgttggagtgcatCCCCTGGCTGTCcgtcaataaaaaaaacaagacaattgtgccatctggtctGCTTAATGCAAGTATGATAATTGAGTACTTTTTTCATCATTgtgttacagtagatatatgCGTGTGTTACATTAATTAAAGTTGTCTGCCTGTATCCCACCTGCTGAAATTGAAGtagattaaatacatttaaattgaaTCAGATTTAATTACATTTGAATTAATACAGTACTACTGCTTTTGTCTAACGATTCACTAGCATTCCAAAAAGAGGGCAATATGAATGTTTGATTGTATTGTTTTGGGTGCAATGAATGCTATCCCAATTTCCTCAGAAAACATCCATACATggttgatattttttttatatagtaAAGAGAAGTAACACATGTTAACACTATCTAATACTGTCAGATTCATTGTAAATCCCatttaaagggacagttcatccaaattacaaaattatatTGTTTTCCTTACCCTGTCAGCAGTtaatggacaaggtatgacagcaatcatgctttgttaatttctttacctggtcactgtttcaaatgctaagtttttttgcatttttggctcaaatccaatgcaagtcatTGGTACCTATATTATAATTGTTGCTCTTTATTAACACATCATCTATAAGAAACTTCAATGAGTTGTGATACATGTTTACATGATTCGGACATGAAGAGTAAAAATGCTAATATAGGTACCATTAACTTGCATTTCATTTGTGCTCCAAATGCTAAAAAGATATATTTTGAAacagtggccaggtaaacaaaaccaatGCATGGAGTGtggtcataccttgtccatagactgcttacacaGGGTAAGAAAACAGTGCCATTTTGTAATTtggatgaactatccctttaataacTTAGTGGTTAACTAGATTATAGTGAGGATAAATTCCTCAATGTTGTGTTACAGGCCTTGACGATGTGTCATTACATTTGGCTATTTTGTGGTTTGAAATCGAATTCTTCACGAGTCAGCTCACACTTTGACACTGCAAAGAGCCGTTCACGTCTGATTGCATCTTGTTTTCCTGGTGGcaaaaaattctaatagttcctTCATTTCAGTTTATGTGGCAAAACAAGAAAGAACCGTgtggagaatcattgtaccatataaaccaatgaaatatattttccataaacaaatatgttgtattttcagctggtgtacaaaactgaatgtaaaagacacaaaaacaaaacttagATCTATCGCtttttagacttgctttcaatgagaatgacagatctgtaGCATGTACGCTGGGAGTCAGAAAGCAAGTGCAGGTGATGAGTTTAATAATAAACAGACCGTTTGCCACAATAACAGCCACGAGCCACGTATAGACATGACACACATAGTCAAATACTGCCTGGGGACTGGAactaagggagtgacagatataggggaggtaatcagtgaagtgatggagtccaggtgtgcctaatgATGAAGCGCAGGTGCGCGTGATGATGaatgccaggtgtgcataatgatgaatgccaggtgcgcgtaatgatgaatgccaggtgtgcgtaatgatgaatgccaggtgcgcgtaatgatgaatgccaggtgtgcgtaatgatgaatgccagaggttgtaatctgaatataggGGAAAAGGCCATTTCTAAACACGGCATGAGCCATTCTTACTAATCCGTTAGAAAACCAGTTAGGATTTAAGTACAATTTTTGTATTACTGAATCCTTAAGTGAGAGGGTCAATCATTTCTTATTTAATAATTGCAGCCCTCCGAAATCATATTCATTATTTAAATTGTCCCGTTTAATTTTTGGTCTGTCTTGCTGTTCCAaatcaaatgtaatattttttgttcatatattttaaaaacaagttGTTTGGTATAGTCCGGGCCATAAGTACATAGGTAAACTGCGATATGACTAAAGAATTAATCAGGATGATTTTTCAACAAATAGACAGGTGTttacctttccatggtagcaagatcctATCTATTTTTGATAACTTTctgtaaaaatgtattggagtttGATCGTTTCTTTCTTTCGGATATGTCACGCcatgaccttagtattctttgttttctttattattttggttaggtcaggatgtgacatgggtgatatgtgtgtttttgtctcatctagggtgtttgtactgtctaggggttttgtagatttatggggttgtttccatctaggtgtttatgtaggtctatggttgcctagattggttctcaattagaggctggtgtttatcgttgtctctgattgggaaccatatttaggcagccatcttctttgggtatttcgtgggttattttctatgtgtagttgcctgtttcAGCACTCTTTAGCGTAGCATCACGgtcgtgttgttgtttttgtttaagtgttaTTTGTGTTTTTCGTCATTCAATAAAATAATggattcacacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU949546 lncRNA upstream 28076 68711965 ~ 68712656 (+) True G834872
TU949542 lncRNA upstream 31159 68707731 ~ 68709573 (+) False LOC110532752
TU949544 lncRNA upstream 31159 68707731 ~ 68709573 (+) True LOC110532752
TU949537 lncRNA upstream 40576 68699877 ~ 68700156 (+) True G834865
TU949536 lncRNA upstream 42120 68698284 ~ 68698612 (+) True G834864
TU949567 lncRNA downstream 889 68765903 ~ 68766122 (+) True G834892
TU949513 lncRNA downstream 3599 68768613 ~ 68806281 (+) True G834842
TU949642 lncRNA downstream 123581 68888595 ~ 68889018 (+) True G834962
TU949970 lncRNA downstream 147640 68912654 ~ 68914754 (+) True G835251
TU950060 lncRNA downstream 183151 68948165 ~ 68949338 (+) True G835298
XR_002474882.2 mRNA upstream 30117 68707710 ~ 68710615 (+) False LOC110532752
XR_002474881.2 mRNA upstream 30117 68707758 ~ 68710615 (+) False LOC110532752
XM_036986968.1 mRNA upstream 115220 68619611 ~ 68625512 (+) False LOC118965941
XM_021616870.2 mRNA upstream 159634 68564136 ~ 68581098 (+) False LOC110532749
XM_021616872.2 mRNA upstream 159634 68564136 ~ 68581098 (+) False LOC110532749
NM_001124724.1 mRNA downstream 89550 68854564 ~ 68861086 (+) True LOC100136778
XM_021616878.2 mRNA downstream 97382 68862396 ~ 68865443 (+) True LOC110532754
XM_036988830.1 mRNA downstream 125456 68890470 ~ 68894840 (+) False LOC118966104
XM_036988831.1 mRNA downstream 125482 68890496 ~ 68894840 (+) False LOC118966104
XM_036988829.1 mRNA downstream 125496 68890510 ~ 68894840 (+) False LOC118966104
TU949445 other upstream 117893 68619916 ~ 68622839 (+) True LOC118965941
TU949456 other upstream 158322 68578897 ~ 68582410 (+) True LOC110532749
TU949373 other upstream 270223 68466559 ~ 68470509 (+) False LOC110531253
TU949377 other upstream 270223 68466559 ~ 68470509 (+) True LOC110531253
TU948768 other upstream 452207 68287215 ~ 68288525 (+) False G834235
TU950021 other downstream 474582 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 475365 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 477200 69242214 ~ 69244478 (+) True G835266
TU950033 other downstream 496157 69261171 ~ 69266474 (+) True LOC110532770
TU950024 other downstream 522262 69287276 ~ 69367788 (+) True G835268

Expression Profile