pofut1 (pofut1)


Basic Information

Item Value
gene id pofut1
gene name pofut1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70461311 ~ 70508110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616935.2
AACGTTTTTCAACATCCAATGCATTCTGGGATGTAGCATGAAACACAATGGCGGCGAAACTCAATCATTTGCAACTTTTTGTGGTTTATTATTCGCTCATAGCAATATTGCTACAAATTAGTCTAACGTGTGCTACAGAGTTAACGTGGGACGACAATGGCTACATTTTATATTGTCCTTGCATGGGTCGATTTGGAAACCAAGCCGACCACTTTCTGGGTTCTTTGGCATTCGCAAAAATCCTGAATCGCACACTGGCAGTTCCCCCCTTCATAGTgtaccggcaccacgcaccacCATACTCAAATGTACATGTCCCCTACAGTGAGTTCTTCCAGCTGGAAGCCCTGACCCACTACCACCGTGTGGTAAGCCTGGAGGATTTCATGGAGCAGCTTGCCCCAACACACTGGCCTAAGGGACAGAGGGCAGCCTACTGCTTTGAGTCAGCTGCCCAGAGGAGCGTGGACAAGAAGTCCTGCCCCATGAAGGACGGGAATCCTTTTGGTCCGTTTTGGGACCACGTAGGAGTGGAGTTTGACAGGTCTGTCCTGTTTGACGGCTTGTCCTTCAGTTCCTACCACCAACCTCATTGGCTCAACAAGTTCCCTCCGTCAGAGCACCCTGTCCTGGCCCTGCCTGGTGCCCCGGCCCAGTTCCCTGTCATAGAGGAATATGTGGGTCTACAGCGGTATGTCGTTTGGACGGAGAGGATGGTGCAGGAGGGACAGGAACACATCGCTGCTCTGCTGCCCAGGCCATACGTGGCCATACATCTCAGGATCGGCTCTGATTGGGTTAATGCCTGTAAGCTGCTCCAGAGTGGGGATACTGGGCCTCACTTCATGGCCTCTCCTCAGTGTGTGGGTTATAACCGTCACACCGCTCTGCCCCTCACCATTACCATGTGCCTCCCTGACCTGGCTGAGATCCGCCGGGCCCTCAAGCTCTGGGTCAAGAAAACCTCTGCCCGTTCTGTTTACATCGCCACAGACTCAGAGTCCCACCTTGCTGAGATCCAAAAACTCTTCAAGGATAAGGTGAAGGTGGTGAGCCTCAAGCCGGACTCTGCTCAGTTGGACCTGTACATCCTAAGCCAAGCTGACCACTTCGTTGGGAATTGTGTGTCCTCGTTCTCTGCTTTTGTCAAACGAGACCGGGATGTCCATTCCCGTCCGTCGTCTTTCTTCGGAATGGACCACGCTGGAAAAATGTACAAGAAACAGGAGCTGTGAAGATTTTCTGTTTCTGGGTCGTCCATTCTGAAGAAAGATGACAAATAGGCTTTTCAATCTTGGGTGAGGACTTGGACAGTGCATTGTGGGAATGTGATCTACTCCATCCTCATATTACACAGTGGTGTAGTAATACTTTTttagggggggagggggggggggggctcagatcGCCGTTCGCTGTGAATAAAGTAACGCTTTCAATGCATGTTTCCTGCAAAAGgtaggtaaaaaataaaacagtTGCGTAAACTGCGTTTACTTGGGTTTAGCTTCTAGTACACCACTGCGATTAAACAATCAGTTACACTATTACATAACTCTTCAGAGCATCAAAAGGGTGTTCAATTTCCACAATACTTTCTATAGCCACAGCTACATATGTCTCAATCTGCATAGCAGCCAAGTTAGCAGGAGCTCAGATCACCCTGTTGAACCCTGGGTGGGTAAGACTTCCAGTGTAATGTCCCGGTCTGATCCTGTGCTCCAGCTCTTACGtgttgctctccctccctcctctttaaTACGATGTAAAGGCGACCTGGTGGATGAGGGTGGGACATAACCCTCTCAGGAGTGCAGTAACTGATCCTGCAGATACTAGTTATAAAGGGGAGGTTGACAGTCTTCCTCCTACATTTGTCTAATGTACGTATGTAAATGATTACTGTATCAGCTTTTGTAATCGGTTTCTGATATTTTTGAAGCGTTGTACCTGCTAGCTAGTTGTATTATTGCTCTGTGATGAAAATGACTGGGAACATGACATTTATGCAAATGAACCCTAAAATGTGATGACTGAGCTTCCTCGGTTAGATAAATGGAGAAGATTCAGGTTTCACTGGTGAATACATGTCTGTAGCCTTGAATGAAACCAGTTAATGCATATTCTCGCTTTTGACATGTTACATTTTTCAATGCATTTCTTTGAATAACATTTTCCAAAGTTATATTGAC
>TU951415
cccccccccccccccccccccctcagatcGCCGTTCGCTGTGAATAAAGTAACGCTTTCAATGCATGTTTCCTGCAAAAGgtaggtaaaaaataaaacagtTGCGTAAACTGCGTTTACTTGGGTTTAGCTTCTAGTACACCACTGCGATTAAACAATCAGTTACACTATTACATAACTCTTCAGAGCATCAAAAGGGTGTTCAATTTCCACAATACTTTCTATAGCCACAGCTACATATGTCTCAATCTGCATAGCAGCCAAGTTAGCAGGAGCTCAGATCACCCTGTTGAACCCTGGGTGGGTAAGACTTCCAGTGTAATGTCCCGGTCTGATCCTGTGCTCCAGCTCTTACGtgttgctctccctccctcctctttaaTACGATGTAAAGGCGACCTGGTGGATGAGGGTGGGACATAACCCTCTCAGGAGTGCAGTAACTGATCCTGCAGATACTAGTTATAAAGGGGAGGTTGACAGTCTTCCTCCTACATTTGTCTAATGTACGTATGTAAATGATTACTGTATCAGCTTTTGTAATCGGTTTCTGATATTTTTGAAGCGTTGTACCTGCTAGCTAGTTGTATTATTGCTCTGTGATGAAAATGACTGGGAACATGACATTTATGCAAATGAACCCTAAAATGTGATGACTGAGCTTCCTCGGTTAGATAAATGGAGAAGATTCAGGTTTCACTGGTGAATACATGTCTGTAGCCTTGAATGAAACCAGTTAATGCATATTCTCGCTTTTGACATGT

Function

symbol description
pofut1 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to be involved in protein O-linked fucosylation and regulation of Notch signaling pathway. Predicted to act upstream of or within Notch signaling pathway and fucose metabolic process. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Dowling-Degos disease. Orthologous to human POFUT1 (protein O-fucosyltransferase 1).

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 1 isoform X1

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616935.2 False 2192 mRNA 0.48 7 70501436 70508110
TU951415 True 763 lncRNA 0.43 2 70461311 70508059

Neighbor

gene id symbol gene type direction distance location
LOC110531266 tm9sf4 coding upstream 84468 70391119 ~ 70416968 (+)
tnr5 tnr5 coding upstream 123062 69312325 ~ 70378374 (+)
LOC110532792 pex10 coding upstream 125353 70371145 ~ 70376083 (+)
LOC110531260 LOC106572818 coding upstream 756150 69643342 ~ 69745286 (+)
LOC110531259 LOC106572815 coding upstream 882181 69464993 ~ 69619255 (+)
kif3b LOC106572821 coding downstream 2013 70510123 ~ 70521031 (+)
LOC110532787 LOC106572837 coding downstream 219785 70727895 ~ 70749329 (+)
LOC118966110 LOC106572838 coding downstream 242728 70750838 ~ 70754151 (+)
LOC110532786 LOC106572841 coding downstream 246185 70754295 ~ 70759695 (+)
LOC110532785 LOC106572839 coding downstream 251877 70759987 ~ 70775436 (+)
G836474 NA non-coding upstream 9900 70489124 ~ 70491536 (+)
G836452 NA non-coding upstream 75632 70422613 ~ 70425804 (+)
G836451 NA non-coding upstream 80122 70420893 ~ 70421314 (+)
G836449 NA non-coding upstream 127592 70373321 ~ 70373844 (+)
G836447 NA non-coding upstream 131891 70368700 ~ 70369545 (+)
G836465 NA non-coding downstream 970 70509080 ~ 70509496 (+)
G836487 LOC106572823 non-coding downstream 13041 70521151 ~ 70524129 (+)
G836507 NA non-coding downstream 19965 70528075 ~ 70529519 (+)
G836547 NA non-coding downstream 99449 70607559 ~ 70607877 (+)
G836374 NA other upstream 291801 70208678 ~ 70209635 (+)
G836274 LOC106581772 other upstream 468209 70032992 ~ 70033227 (+)
G835268 LOC106572807 other upstream 1133648 69287276 ~ 69367788 (+)
LOC110532770 LOC106572808 other upstream 1234962 69261156 ~ 69267394 (+)
G835266 NA other upstream 1256958 69239596 ~ 69244478 (+)
G837369 NA other downstream 724676 71232786 ~ 71233424 (+)
znf335 LOC106572852 other downstream 873049 71376417 ~ 71415664 (+)
lamtor5 xip other downstream 954325 71462207 ~ 71466030 (+)
G837570 NA other downstream 1119738 71627848 ~ 71639759 (+)
LOC110532768 tnr14 coding upstream 1053111 69384397 ~ 69408200 (+)
G836412 NA non-coding upstream 139771 70285939 ~ 70321540 (+)

Expression


Co-expression Network