G836487 (LOC106572823)


Basic Information

Item Value
gene id G836487
gene name LOC106572823
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70521151 ~ 70524129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU951458
TGATAACCTTCGACAGAACCAAAAAAAAAATAAGCTATATTCAAAGGAAACCAAAGGAATGCTTCTACAGCACAGAATAAAAGGCAGATTGGGAAAGACTTGGTCATCTACCACAATATTGAAAATGAACATGACAGAACTCAAGACGTGTACTGTTACACAGTCAGACGACCAAGTCACTGTAAAGATTGATCGATAATTTGATCAATGAGAAAGCATTATCTTTCCAAATGTTCTATTAAAAAAGGACAAATCAGAATAGTTTTTAACTAGAATGCAAGCTTCATGCGACATACTGTAGGTTTGGCACTGAAGGGTGAAAGTTTCGGAGTCGAGATGAAAAAGGGTGGAATATCTGTAGCGATTAAGatctttaaaaaaattatattttagtCCGTTTTTACATTTTCCTGTTGCATTACAAACCAAatactacacacaaaacaatgtcCCATGTGTTGATGAACACCACAAAACTCCACTAACAAAACAAATAGTTTTGAATGACAGGAGAAAAGATAAGCAACCCTTCACACATCAACAAAATTCATTGGCATCATCaaccagtaaaaaaaaaacattgtttAGGGTTAGAGTCAATTTCACCTTTATCCAATAAATTCAGAAGCTAATGCAATTCAACTAAATTTAAATCCACCTATGAATCAAATTTAAAATGAGTCCCCCGAATTGACAATTAAAAATGTCCCAACACGGACGAGCTAGGAAATATTCATAGGACCTCTTGGAAAATAAATCTACTAAACACAAAAAGAGATTTTGATCTCTAGTAGGTGCTTTTGAGTCTGGAAATGAGCAGAATCCGTCATAACAATTGAAGAAGCATTGCCAACCTTAGTCTCATGATCATGTTGAATCTGAAACGTCTTCTGGACTTAATCATATCATAGTGTCGACTACAGTTATTCTCTGAAATGCTGACTCTCAAAAACACACCTAGTCTTCACTGCCAGTCTACCAAGGTCAACCTGCTAACAGAATAGAGTTAACCAATAGCCTCACTttagatatatacacacacgtctCTAAACCACACTCATCATAATGTAGGTCAACAGTTTCAGACATACCACGTCTTCAACAGGCACCTCTACCAGCTCCACACCCACACGTCTTCAACAGGCAGCTCCACACCCACACGTCTTCAACAGGCAGCTCCACACCCACACGTCTTCAACAGGCACCTCTACCAGCTCCACACCCACACGTCTTCAACAGGCACCTCTACCAGCTCCACACCCACACGTCTTCAACAGGCACCTCTaccagctccacacacacacacacacacacgtcttcaaCAGGCACCTCTaccagctccacacacacacgtcttcaaCAGGCACCTCTACCAGCTCCACACCCACACGTCTTCAACAGGCACCTCTACCAGCTCCACTCACCCACACGTCTTCAACAGGCACCTCTACCAGCTCCACACCCACACGTCTTCAACAGGCACCTCTACCAGCTCCACTCAGCCACACCAGATCAGACCAATGTTACGATGTGCAATATCAAAAACAAAATGGCCTCACTGTGGAATCCTACCTGATACTCATTGTGCAAGATCTGTTGATTTACAGAGTTCCAACTCCACACAAACAGCTCCCCTGAACAGATCTATGATGTTATGggaacttggggggggggggggggggggggggggtctaatagGGAAAATCCCAGCTGTGTGGTCTCCAATCCCTGTCCACTATGCCAAACAAAGTCTCTCTGGCTTCTGGACACGACTGAAATGACAAGCTATTTCTCCTCCGGCTCGGACACTATGCCATTTATGAAGCACAAGGCTCTAAAGCAATATCCAGTGGTTTACCTTTATTGAAGACCTGAACCAACGTGCTCTGGAACCTGTGGCTGCACGTAACGACCAATAAGAAGTCTTCCAACAAGATAACAGACACCACCGTATGTCCGGGGCTCAGTCACAGCACAGAATGATAGATCACAAACTCACACCCACCCAACTCTCGGAGTTAAAATGGATCTGTTTGGCTGTCAGAGAAAGCTATCTGTGCCATTGAGAAAGCTAAGCTACAGATTCCCAGGGAGCCTTTCTATCACAGAGGTGAAACTCTTACCATTACACTGGTCAAATATGTATGCTTCTTACACATACAGAAAAGGCATTGAGtaagaaaaacacagagagagagagagagagagagaggatgatgtaGAGGACAGGAGGGATACAGACCCAGTCAGTAAGTCAGTAACAGGGGGCCTGTTGCCCTGCCTAGAAGAATGGTAGGGGTCAGGGGTTGTAGATGCCCAAGGCTGGTTGCTTGGTTGTTTTCTGCTGTTAGTTCTATCTGTGGAGAAGTCATTTCTCCCGGTAGTACAGCAGGTACATCTTCAGAGGCTCCGGGAGGGGCAGACAGAGAATCCTCTCTCTCAAGATGTTTATAGGTGGCTCTGCCCGGAGTagctcccctgtctccctctctgcttcctcctcttcttcctcctcctcctctgccgcAGCCTCCTCTCCCGCTCCCCGGGTTGCCCTTCCCTGCTCCTCCACCTTCTGGCCCCCGCGGTTATTGTTGTTGTCCAGGGGGGCGGAGGTAGGGAGGGCACTGCTCAGTACCACAGAGTTGCCGTGGCGCCGATGAATGCGCCGGCGTTTAAAACGCGGACCGTACTTGTGGAGCCCACTGACCCCCAGGCCCCTGCCTCCTCCAAAAGAGCCCCGGCCTCGTGGCTGACCCCCCCTGTTGTCCGTGGTCACTCTCAGGGTGTGGCGGATGGCTATACGAGCCAGCTCTTGCAGCGTCCGCACCTCAAA

Function

NR:

description
protein-L-isoaspartate O-methyltransferase domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU951458 True 2836 lncRNA 0.47 2 70521151 70524129

Neighbor

gene id symbol gene type direction distance location
kif3b LOC106572821 coding upstream 120 70510123 ~ 70521031 (+)
pofut1 pofut1 coding upstream 13041 70461311 ~ 70508110 (+)
LOC110531266 tm9sf4 coding upstream 104183 70391119 ~ 70416968 (+)
LOC110532792 pex10 coding upstream 145068 70371145 ~ 70376083 (+)
LOC110531260 LOC106572818 coding upstream 775865 69643342 ~ 69745286 (+)
LOC110532787 LOC106572837 coding downstream 203766 70727895 ~ 70749329 (+)
LOC118966110 LOC106572838 coding downstream 226709 70750838 ~ 70754151 (+)
LOC110532786 LOC106572841 coding downstream 230166 70754295 ~ 70759695 (+)
LOC110532785 LOC106572839 coding downstream 235858 70759987 ~ 70775436 (+)
fam50a fam50a coding downstream 254212 70778341 ~ 70784847 (+)
G836465 NA non-coding upstream 11655 70509080 ~ 70509496 (+)
G836474 NA non-coding upstream 29615 70489124 ~ 70491536 (+)
G836452 NA non-coding upstream 95347 70422613 ~ 70425804 (+)
G836507 NA non-coding downstream 3946 70528075 ~ 70529519 (+)
G836547 NA non-coding downstream 83430 70607559 ~ 70607877 (+)
G836550 NA non-coding downstream 85673 70609802 ~ 70610039 (+)
G836826 NA non-coding downstream 108748 70632877 ~ 70633157 (+)
G836833 NA non-coding downstream 121145 70645274 ~ 70650926 (+)
G836374 NA other upstream 311516 70208678 ~ 70209635 (+)
G836274 LOC106581772 other upstream 487924 70032992 ~ 70033227 (+)
G835268 LOC106572807 other upstream 1153363 69287276 ~ 69367788 (+)
LOC110532770 LOC106572808 other upstream 1254677 69261156 ~ 69267394 (+)
G835266 NA other upstream 1276673 69239596 ~ 69244478 (+)
G837369 NA other downstream 708657 71232786 ~ 71233424 (+)
znf335 LOC106572852 other downstream 857030 71376417 ~ 71415664 (+)
lamtor5 xip other downstream 938306 71462207 ~ 71466030 (+)
G837570 NA other downstream 1103719 71627848 ~ 71639759 (+)

Expression


Co-expression Network