XLOC_026818 (hbba1)


Basic Information

Item Value
gene id XLOC_026818
gene name hbba1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55098457 ~ 55099272 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052150
GCTAGTGATTCCTACTGGACTTTAAGCAAGCACCTAAGGACATCCTAAAGCGTAAACATGGTTGAGTGGACAGATGCCGAGCGCACAGCCATCCTTGGTCTGTGGGGAAAGCTCAATATCGATGAAATCGGACCTCAGGCCCTATCCAGATGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACATTCGGCAACCTGTCAAGCCCCGCTGCGATCATGGGTAACCCCAAAGTGGCAGCTCATGGGAGGACTGTGATGGGAGGTCTTGAGAGAGCCATCAAGAACATGGACAACGTCAAGAACACCTATGCCGCCCTCAGTGTGATGCACTCTGagaaactgcatgtggatcccgACAACTTCAGGCTTCTCGCTGACTGCATCACCGTTTGCGCTGCCATGAAGTTTGGCCAGGCTGGTTTTAATGCTGACGTCCAGGAGGCCTGGCAGAAGTTTCTGGCTGTGGTGGTTTCCGCTCTGTGCAGACAGTATCACTAGAGTCTCATCGCCAATGAACGTCAGGTGTGTTGGAGAAGGTCACACCGCGCGGAGCTGTTCAAACAAAGATCTAACGCTTTTACAATAAGatcaataaaataatgttaaaagcA

Function

symbol description
hbba1 Predicted to enable oxygen carrier activity. Acts upstream of or within response to hypoxia. Predicted to be part of hemoglobin complex. Is expressed in brain; eye; intermediate cell mass of mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-18 Predicted to enable oxygen carrier activity. Acts upstream of or within response to hypoxia. Predicted to be part of hemoglobin complex. Is expressed in brain; eye; intermediate cell mass of mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

Ensembl:

ensembl_id ENSDARG00000097238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052150 True 617 mRNA 0.50 3 55098457 55099272

Neighbor

gene id symbol gene type direction distance location
XLOC_026817 hbba2 coding downstream 6406 55091230 ~ 55092051 (-)
XLOC_026816 nprl3 coding downstream 18715 55045346 ~ 55079742 (-)
XLOC_026815 rhbdf1a coding downstream 105430 54896331 ~ 54993027 (-)
XLOC_026814 NA coding downstream 214277 54873401 ~ 54884180 (-)
XLOC_026813 ubald1b coding downstream 252013 54833658 ~ 54846444 (-)
XLOC_026819 hbba1 coding upstream 4173 55103445 ~ 55104310 (-)
XLOC_026820 hbae1.1 coding upstream 21058 55120330 ~ 55121125 (-)
XLOC_026821 hbae1.3 coding upstream 28277 55127549 ~ 55128258 (-)
XLOC_026822 hbae1.3 coding upstream 39141 55138413 ~ 55139127 (-)
XLOC_026823 hbae3 coding upstream 47146 55146418 ~ 55147788 (-)
XLOC_026812 NA non-coding downstream 277557 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 314136 54748396 ~ 54784321 (-)
XLOC_026805 NA non-coding downstream 1255673 53842532 ~ 53842784 (-)
XLOC_026804 BX004869.1 non-coding downstream 1409029 53689310 ~ 53689428 (-)
XLOC_026831 NA non-coding upstream 739182 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1311869 56411141 ~ 56413023 (-)
XLOC_026840 NA non-coding upstream 1937822 57037094 ~ 57037670 (-)
XLOC_026851 CT583687.2 non-coding upstream 2958342 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 3009159 58108431 ~ 58110154 (-)

Expression


Co-expression Network