XLOC_026819 (hbba1)


Basic Information

Item Value
gene id XLOC_026819
gene name hbba1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55103445 ~ 55104310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052151
AGTGATTCCTACTGGACTTTAAGCAAGCACCTAAGGACATCCTAAAGCGTAAACATGGTTGAGTGGACAGATGCCGAGCGCACAGCCATCCTTGGCCTGTGGGGAAAGCTCAATATCGATGAAATCGGACCTCAGGCCCTATCCAGATGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACATTCGGCAACCTGTCAAGCCCCGCTGCGATCATGGGTAACCCCAAAGTGGCAGCTCATGGGAGGACTGTGATGGGAGGTCTTGAGAGAGCCATCAAGAACATGGACAACGTCAAGAACACCTATGCCGCCCTCAGTGTGATGCACTCTGagaaactgcatgtggatcccgACAACTTCAGGGTACGTCTGCATTAACTGAATGATGTTAATACTTAAACAGCCGTGCTCTTAAATTAGTATATGGGGAACCCGCAGCTTAACTGATCTCTTGTTTTGCAGCTTCTCGCTGATTGCATCACCGTTTGCGCTGCCATGAAGTTCGGCCAAGCTGGTTTCAATGCTGATGTCCAGGAGGCCTGGCAGAAGTTTCTGGCTGTGGTCGTTTCTGCTCTGTGCAGACAGTACCACTAGAGTCTCATCGCCAATGAACGTCAGGTGTTTTGGAGAAGGTCACACCGCGCGGAGATGTTCAAACAAAGATCTAACTCTTTTGCAACAAGatcaataaaataatgttaaaagcA
>TCONS_00052152
GGGCGGAGACATCACACATCAATAAAATGCACCCCGGTTTCTGAATTTCTGCTAGTGATTCCTACTGGACTTTAAGCAAGCACCTAAGGACATCCTAAAGCGTAAACATGGTTGAGTGGACAGATGCCGAGCGCACAGCCATCCTTGGCCTGTGGGGAAAGCTCAATATCGATGAAATCGGACCTCAGGCCCTATCCAGATGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACATTCGGCAACCTGTCAAGCCCCGCTGCGATCATGGGTAACCCCAAAGTGGCAGCTCATGGGAGGACTGTGATGGGAGGTCTTGAGAGAGCCATCAAGAACATGGACAACGTCAAGAACACCTATGCCGCCCTCAGTGTGATGCACTCTGagaaactgcatgtggatcccgACAACTTCAGGCTTCTCGCTGATTGCATCACCGTTTGCGCTGCCATGAAGTTCGGCCAAGCTGGTTTCAATGCTGATGTCCAGGAGGCCTGGCAGAAGTTTCTGGCTGTGGTCGTTTCTGCTCTGTGCAGACAGTACCACTAGAGTCTCATCGCCAATGAACGTCAGGTGTTTTGGAGAAGGTCACACCGCGCGGAGATGTTCAAACAAAGATCTAACTCTTTTGCAACAAGatcaataaaataatgttaaaagcA
>TCONS_00052153
AAGTTTGTCTTTGTGTTAAATGAATGCAACTATATGCAGTTTACTTAATGGCGCTCTTAATGCCTCTGTTTTTGAAGATGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACATTCGGCAACCTGTCAAGCCCCGCTGCGATCATGGGTAACCCCAAAGTGGCAGCTCATGGGAGGACTGTGATGGGAGGTCTTGAGAGAGCCATCAAGAACATGGACAACGTCAAGAACACCTATGCCGCCCTCAGTGTGATGCACTCTGagaaactgcatgtggatcccgACAACTTCAGGCTTCTCGCTGATTGCATCACCGTTTGCGCTGCCATGAAGTTCGGCCAAGCTGGTTTCAATGCTGATGTCCAGGAGGCCTGGCAGAAGTTTCTGGCTGTGGTCGTTTCTGCTCTGTGCAGACAGTACCACTAGAGTCTCATCGCCAATGAACGTCAGGTGTTTTGGAGAAGGTCACACCGCGCGGAGATGTTCAAACAAAGATCTAACTCTTTTGCAACAAGatcaataaaataatgttaaaag

Function

symbol description
hbba1 Predicted to enable oxygen carrier activity. Acts upstream of or within response to hypoxia. Predicted to be part of hemoglobin complex. Is expressed in brain; eye; intermediate cell mass of mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-18 Predicted to enable oxygen carrier activity. Acts upstream of or within response to hypoxia. Predicted to be part of hemoglobin complex. Is expressed in brain; eye; intermediate cell mass of mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

Ensembl:

ensembl_id ENSDARG00000089087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052151 False 713 lncRNA 0.49 2 55103445 55104257
TCONS_00052152 False 667 mRNA 0.50 3 55103445 55104310
TCONS_00052153 True 543 lncRNA 0.48 2 55103447 55104088

Neighbor

gene id symbol gene type direction distance location
XLOC_026818 hbba1 coding downstream 4173 55098457 ~ 55099272 (-)
XLOC_026817 hbba2 coding downstream 11394 55091230 ~ 55092051 (-)
XLOC_026816 nprl3 coding downstream 23703 55045346 ~ 55079742 (-)
XLOC_026815 rhbdf1a coding downstream 110418 54896331 ~ 54993027 (-)
XLOC_026814 NA coding downstream 219265 54873401 ~ 54884180 (-)
XLOC_026820 hbae1.1 coding upstream 16020 55120330 ~ 55121125 (-)
XLOC_026821 hbae1.3 coding upstream 23239 55127549 ~ 55128258 (-)
XLOC_026822 hbae1.3 coding upstream 34103 55138413 ~ 55139127 (-)
XLOC_026823 hbae3 coding upstream 42108 55146418 ~ 55147788 (-)
XLOC_026824 kank2 coding upstream 57317 55161627 ~ 55214130 (-)
XLOC_026812 NA non-coding downstream 282545 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 319124 54748396 ~ 54784321 (-)
XLOC_026805 NA non-coding downstream 1260661 53842532 ~ 53842784 (-)
XLOC_026804 BX004869.1 non-coding downstream 1414017 53689310 ~ 53689428 (-)
XLOC_026831 NA non-coding upstream 734144 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1306831 56411141 ~ 56413023 (-)
XLOC_026840 NA non-coding upstream 1932784 57037094 ~ 57037670 (-)
XLOC_026851 CT583687.2 non-coding upstream 2953304 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 3004121 58108431 ~ 58110154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G275362 NA non-coding NW_019172283.1 APWO02001881.1 602725 ~ 603000 (+)