G799457 (LOC106571893)


Basic Information

Item Value
gene id G799457
gene name LOC106571893
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36827899 ~ 36833763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU909912
CATTTATTGATTTTAACCAGTATGACTACCTTTACACAGACATAACACCTCTCTATaggaaaacaaaacaacactTTCATAGGATTagctcagcagtaatacattagACTAAACTCATTTTTTCATCATTAAATTTTTTTCACTTTTTCAGCATCTCCAAAGTTATAGGTTTGTTTTCGATTCTGTGTAAAGGTTCCCATGACTGAAAAACATGCATATGACAATAAGTTGTAATCAATATGCCACTAATTATAATGCACATTATTGATAAGAATACAGTACTGCATGACAATCCAAATAAATACCAACATACAGATTAAGTCGTTATTTCATATAAAGGTATCAAACTCAATATGGATCAATACTGAAACACAATATGACAATATAAAGTTTGCACGGCTAGTGTATTATCACAATGCTATCGCTTCCAGCAAACAGAAAACTTTTATTTTCCTTGTAAAACAGCATTTAAATTGCACTTTGTTTTCTCCGTATTTTTCGCTTCTCAACCGTAATGATAACTTTTTACGCCTCAACAAACAAGCATTGGCTAGGATGGCACTATTCAAGCTTGTTGATGCAAAATCTGTTTTCTATTTCCTGAAATCACAACACTTTAATatatgatgtaaaaaaaaatattcaatagaaaaacaaaaacaaatcaaagAGAAAATGCGCTCTCTGCACATTTGCCAACAATACTGTAGATATTACATTACCTTCACCATACAAAGCTAGAGATCATGTCGATGTTTCCAATAGTACACTGATCTGCCCAAACACATAGTGGTGCATGGAACATTTTGTTCAAAATGAGGCCAAAGGGATTTATTTTGGTTCCCAAagtttgataataaaaaaaaactacattttcTCAATACCCCTGAATTTGCTGTTGGGATCACTGACCTGCAGAATTCAATACAATATCAGTTGAATTGAGCTAATTTCAAAACGATCATCTCACTCCTGCAAAAAGGGCTACTCCTCTTTGCATTTATTGCTGCTCACAAAGTCATTCAACCCAAACTCCTCccctaaaaaaacaaacacaaagtACTAGTCTACAATTCTCCCTTGAAACAATGAAAGGCACTACTGGTCAGAATGAAGAACAAAACAAACCCAAAGCAAAACCCGGGTAGCGCTTCAGCAGAAAGCCACAGCCCCAAACTACACCTTTCTCACTGATGTACGGCTTGTCTTTCTGATTCTTGAATCTTTTCAAACCTAAACGGTGTACCAGGATTTGGCAcgataaacaaagagagaattAAACCATTCCAATTTGGAATTTAATCGTTGCACTTGCAGAGAATTCTGTGAGCCAGTGATCCCTTATCAGTGTGACACCCTTGGTAAGAAGATGGAAAAAAACAAAATCATTTTGTCACTCCATTTTTCCCCCCCAAGAACTTCTTACCATTTTTTTTGAGTCAGAGCGTCGTCAAGTTTCTGTTAGCTTTGAACTATTCCTAGGAATAATAAATACATGAAAACCCCAGAATTAGCTCACCCTGGATTTTGTTTCAAACATGGCAGTAGAACATACATATAAAAACCAAACCAACAGCATAATAAAGCAATATGATGAGACATAACAATAAAAGGATGGTTATTCAGATGGATCAATTCTCAGAAGCACAATAACAATAGATGGACTCTGGTTTGCGGTGAGACTTTAGGAGAGTAAATGGTCTCTGTAGATGGTACAAAGAGACCATATACAGGAGGAAATATATTCCTTTTAATATATGTGTATACTTGACTAAATAAGTCACAAACCTTAGCACTACAAACCTTTCCTAGGTTAACAATATAAAGTTATATAATcctataataaaagtgcacagctTAAAGAAAACAAATCAACTAAAACAAAAAAAGATCAAACCAGACAAAACAGTTGGTTGATTTACATTGAGAAAAGACCATGGTTCCCCTGGCTTCTCATTGGAGGGATAACTCCGCCAATCACAAACTCTGATCATCATTTCATGAGGAGGGCAGAGTTCACTGTACTTGTGAGCATCGGCAGCAGCGCGGGGAAATGTGAAATACCGTGTTCATTCCCATGCATAGGACATTGAGGTCGTGCTATATTGCGAGTTAAAGGGCAACCTGGAGGAATATTGGATTTTCCTATCAGAGATTTCATTTGATCTTTTTAGTCTTGAAGTGGGTTTCATAATCTTGGCCTATAGGGCTATCTGTTTTCTGCACAATGAATGTGACATCGGCATTGTGAGAGGATCCTGTGTCGGAGGAACCTCCTCCGGGCAGAATTAAATGACTGCAAAACGGAGAAACAAAGAAAACATAAAAATTTGCATTACTGGTACATTTAGAGAGATGTTAACTTCCTCAGAAATGATTCCATTCCAATCAAAAACATGAAACAAGGAAGAGTAAAAAGATGTACACCGAAGGCCCAGTTAGTTACAGTAGCTACTAACTAGCGGTTGGTGCAAACTGGGTCAGTAGTGCTGAAGCAGACTGTCATatcaacattgtgtcaatatgttTCAGAGGAGCTGATATAAAAGCACTACTGCACGAGGAAGACCAGTGAGTGCAAGAAGCTGATGACCTCACAAGTACCATGACCTTTGACACCTCCAAAACATATGATGAGCCCCAAGAGTTTAATCCACACCCCAGAACCAGGTCAGTCATATGAGGGGCTTTCCTTACTGGCATGCAGGTTAATGAGAACGGGTGTGTTTTTTAGCGTGCAGGCGTTCAACCAATCAGGAATCAGACGAAGAGCGTGTGAGAGAACTCAAAGGTGAAGTGGGCGGAGCCTAAAGGCAGAGGTAGGAGGGAGCTTATTCTGGTGGCATTCTATTGATGACACCAGATAAACAGACATTGATTTCAAACTAAACCAAGAGAACTAGGGAGGGTCTCTCTAGCCACAATCACATCCTGGATTATGAAATATATAGATTATTCAGTGAATCTATAGTGCCTACACAAGGGAACAGGGATAGAAGGTCAACTCATTTGAATCAATGTCCACTGGTAAAATACCACATTTAAAGACAAAGTAGTCAAACAAAAACctaatgtaaatacatttgtcatCTTAGAGCATCTCCCTCAGAAAACCCTGGAACTCATTTCCCCAAACACAGTATCAAAATCATGTTCAGAATCGGCTGAGAGAGCTCGTCTTTCGGGTGCAGGTGCTTTTAAACACCAGTAttacttctctctcctctcccactctctacacCCAGAGCAAACTGACACAAACAAAGTGTGATTCTATCACTGTCGCTTAAGTGGAACAAGAACAGAATAGTGATTTCCCCTCCCGTGGAGGTTCTTCTCTGATGTGAGCGATAGCCTCGTCTCCGTACTGTGTGGCGTGACTAAAGGCCTCGTAGGGCAGCGCAGCACATACTCAACTCAAGCAGGGTTGAGGACGTCCCTCGTTCGGAGGAACcaaagctctccctctccataCCCGAGAGAGGTGGCCTAGGAGTATCCTAGAAGATTAGAACCTGATTACGATCGTATTATTAAGAATATATAGTTTTAAAAAGCATAATTGAATTAATCTTCCAAGAATCTCTTCGCATCAACCCTGCTTTTAGCGCCACAAAGCTAATACCGTGTATGCATTACATGGCTCTATCTAACACAAGCCCCACATCAGTTTTTTTAATCTGCCCGGCACTAGATTGCAAGGGTTAAagcttttttttttggggggggggggtaataaagACAGTACATTGGTTGTCCTCTCACATCCACACAGCATCTCAGAAATGAATCTATTTGCAATATTTGGAGAAAACGACATACACACAAGGGTCTTTCACCTCAGTGTCGGAGctgagattacACACACGTGCGCAAGGACGTTACCTGACAATATCCAGGGGTTTTCCCCACAATCCCCCTCTCTACTTAAAGGGAGAGTGGTGTTGTAGGGCGAGCAAGCTGCTGACAATCtaaaaagagagaggggttgtCATGACAACAAAGCGACGAACCACACGTTTGAGACGTGAGGAGGACAAGGTTTTCAGCCACATACCCACACATAGTTCATTTGAGAGCTCAAAAGGGCCTcccaaaaaagagaaagagagaagcaacagggagagagaggaagagagatcagcattAGGctgacagacacaaagacagggcTTTACATCGATATATAGATGTAGTTGATTTCAAGTGTTTGGGTCGACAGGCACTTTGCCGAGGGATATTGGTCGGTTTTGTTTGTAGAATTACGATCCGGATCTGGGTGCCATTGATTTTTGTGCTCTTTTAGGATCTTTTCTGTTATTACAAAAATCACCATCAATCAAAACTATATTGTATCTGTTCACAGTTATTTGATCATTTTCTTTCGTTCTTAAGTAATATGGCTGAGAGAATCCACCAATATGACATATACTAGGTCACATGGAATAGCCCTCTGTTTATTTCTGCAGACGTTAAATAACTGCTCTGGTTCAAATGTAGAGCCCTGTAGCACATCTGCATGTGCTGTGACACACCTGTTTACAGAGAAAAACTGTTATAAAGCTCAGTAGCATTTTCAGCTGCAAAGCCATGCGATTGGACTGCCTGACTCTACCGCGTTGGTGTGCAGCTTAAAGGATCTTGAAATGAAACACCTGTGGTCTTAGGTGCTCCTTTACCGCCCACCTCCGACATCATTAATTATCAGCCAACCCGCTTTGAGAATTTTGAATTTCAGTTAGAAAATCCAGCAAATCACACTGGGCTCCCTAGCAACAGCAGGGGGAGTTTGCATATTGTTTTGTTTCATTTGTTAATGTAAACATTCATGAGCAACCTGATTGGTCAGTGGGTTGCTGGGGCTGGCTCAGTCCTGgggggccaggagagagaggggaagaggagcggGGGCTTTATCGAAGGAGCACCAACGCCAACAGGCAAGCAAAACGAGGAGAGGACGTCAACTTCTGTCACATGATCCTAAAAGTGACACCCTCTTCACAAGTCCCCACCCCCCAAATGCATTATGGTTACCAGGCAACACACTCAGGGGGGGTCAGAACACACTAAGCACAAAAGCTGCCACCTTTTACATCATCATAAGTACAGCACCATGACGGCGGAAAGAAGTGACACCCCATAATATCCACAGAAGCCCAACGGCGGCCGGTTGAGGCCATATCCACATGCCATACATTATGTCTACTACAATCCCAAACTTCTAGGGCACACTGTACTGTACGGTACAGTACATACACAGCTGCATTCCCCTAAGCGTTTACACTAGCAGGCGTGAGTGGCCATACGTGGCCATAGGCATAAGTATGTACTATAGGTTAGACACACACCAGGCTGAGCAGGCAGGGAGCTAAGCGAGCATAGTAGGGCTCTTTAACACTAAGTCAGGGGAGGACCTCGGGCTCCTCCCCTCTGTACACAGCAGTCCCGTGCTGACAATGCAGCCGCTTCAGTCGCAGTAGATCTTGTACTTCTCGCTGCAGAAGACCACTGGGCCTCCCAGGATGCCGTTGGGCATGATGTTGTGCTCACTGGGGCGACCGATGCCGGCGCAGGTGAGCCCGTGACTTACGTGGGGGTTGTTGGCGGTGTTGGTCTGGCCGTTGGTGGTTCTGCCGTTGGTGGTCCTGCCTTTAGGTTTGCCCCCGCGGCGGGTCTGCTCGGTGTCAAACTCCAGGTCCTCCAAGCGCTGGGTCAGGGCTAGCTTCTGCTGGATGGCCATACGGAGGAGGGAGTTCAGGGTCTTCTTCTCATCCTCTGCCGCAGACAGCTGTCTCTGCATCTCATCCAGCTGAGTCACATACTCG

Function

NR:

description
protein bicaudal D homolog 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU909912 True 5828 lncRNA 0.43 2 36827899 36833763

Neighbor

gene id symbol gene type direction distance location
trnap-agg-150 NA coding upstream 215556 36612272 ~ 36612343 (+)
trnap-agg-149 NA coding upstream 216959 36610867 ~ 36622475 (+)
trnap-agg-148 NA coding upstream 218361 36609467 ~ 36609538 (+)
trnap-agg-147 NA coding upstream 219763 36608065 ~ 36608136 (+)
trnap-agg-146 NA coding upstream 222567 36605261 ~ 36605332 (+)
LOC110531983 NA coding downstream 101298 36935061 ~ 36937214 (+)
adtrp1 LOC106571895 coding downstream 104085 36937848 ~ 36942240 (+)
LOC110531160 LOC106571896 coding downstream 107746 36941509 ~ 36953375 (+)
LOC110531987 LOC106571899 coding downstream 127552 36961315 ~ 36970867 (+)
LOC118966039 NA coding downstream 196997 37030760 ~ 37063684 (+)
G799347 NA non-coding upstream 7298 36820050 ~ 36820601 (+)
G799342 NA non-coding upstream 23085 36804533 ~ 36804814 (+)
G799341 NA non-coding upstream 23412 36804262 ~ 36804487 (+)
G799331 NA non-coding upstream 37799 36789804 ~ 36790100 (+)
G799329 NA non-coding upstream 40598 36786967 ~ 36787301 (+)
G799536 NA non-coding downstream 145758 36979521 ~ 36979856 (+)
G799573 NA non-coding downstream 188459 37022222 ~ 37022581 (+)
G799590 NA non-coding downstream 191864 37025627 ~ 37025884 (+)
G799582 LOC106571900 non-coding downstream 212955 37046718 ~ 37048303 (+)
G799626 NA non-coding downstream 260993 37094756 ~ 37094961 (+)
G799053 NA other upstream 511094 36313129 ~ 36316805 (+)
G797932 pphln other upstream 1455751 35364988 ~ 35372148 (+)
G797056 NA other upstream 2271277 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 2706159 34121422 ~ 34121740 (+)
G794886 LOC106577459 other upstream 4240511 32583606 ~ 32587388 (+)
G799578 LOC106571900 other downstream 200655 37034418 ~ 37035918 (+)
G799858 LOC106571908 other downstream 733482 37567245 ~ 37570411 (+)
G800834 NA other downstream 1236453 38070216 ~ 38071433 (+)
G801778 NA other downstream 1954298 38788061 ~ 38788354 (+)
G801851 NA other downstream 2099189 38932952 ~ 38933868 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G19366 NA non-coding CM030122.1 CM030122.1 51565289 ~ 51571994 (+)