XLOC_027429 (znf1059)


Basic Information

Item Value
gene id XLOC_027429
gene name znf1059
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28814850 ~ 28822393 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053926
ctcttGCGCCGTGATTtcactggagaaaggatacaTTGTCCAAACGCAGaggaaaaactcctgctgaagcgactgatttccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattctcagtcaaacaggaagatctgcaggaacaaacagacctgatggtgctgaaaacagagactcaacaatggaatgaaatggaagagaaacaGTTTGAGAAACAGCAAGAAAtaactgatgaaaaacccacactgactgaaAAGACTTCATCACACGGAAGACCTCGGAATTCCAAATCTGCATGTAATTTTACTTGTCGTCAGTGTGGAAACCGTTTTAGTCGAAAACACAATCTTCAagtccacatgagaattcactcTGGAGAGAAGccctacacatgccaacagtgtggacaaTGCTTCTGTACTAGTGGAAACTTGGTagtccacatgagaattcacactggggagaagccttactCCTGCTctcaatgtggaaagagttttaagcaaattAGCAAtcttaaagtccacatgagaacacacactggagagaggccgtacgaATGCCAACAATGTGGACAGCGCTTCTATACTACAGGAAACTTTGCAcagcacatgagaattcacactggagtgGGGCTGTACCCATGcctacagtgtggaaaaagcttccaTCAATCAGCAAACTTGGTagcgcacatgagaattcacactggggagaggcCTTACTCTTGcattcagtgtggaaagagttttaagcaaaataGCAACCTTGaagcccacatgagaattcacactggaggaAGAATTTTTacttgcacacagtgtgggaaaagttttgctCAAAAGCAAGACCTTGAGATCCACATAagggttcacactggagagaaaccttacacatgcacagagtgtagTAAAAGTTTCAGATATAAAagcacactcaaacaccacatgataagtcacaccGGGGAGAAGCCGTttacatgtgctcagtgtggaaagagcttcacaaccaaagctagcctcatgaaccacatgaatggtcacactggaaccacagtgttcacatgtgatcagtgtggaaagagcctCACACGCAAAGACACCATTAGgcaacacatgaagactcacttAGGAGAGGATtgttttagatgcagtgagtgtggaaagggctttaaatgTAAAAGAAGCCTCAgcactcacatgaagcttcacaatggagatcAGAGTCCTCAAAATTGAGGGTTAGTCAAGcagagcttagggctctctcccgggacagcatgctaaacaagtTTGTACTCTTGAATACATATCAAGTTACTGaaaatgaaaccctttgaacatctgaagatttaaactcagggtgctttcacagctacacttttgtttcggaacctgtctcgtttgcccagttagcgcggttcgtttggcatatgtgaaaccaacAAATTGCTCTAGGATCTGCGCCAAATCATCACTCCAAgttcgcttgaatgaggtggtctcggcttgattgaaacgcactctggagcggatcgattgcagtgagaaagcgatacaatccgagcgcggttatatcacagtgtattatggatatgtaataggcatacggctatatgaagaaagAATTATCTCCCGACtacctcccggtcctcaaataggctacgtcgcgcacccttctcacccctccccaccgcatctctcctcagacacgtcgcgcgcaccttgtcacACACCATTAAaacaccacctctcctgacaactgagcaggactctgcaaaataaaccctgacactctgaccaatgtgagttagagtttactcacacgggacttgttttagctcttttggtccaattagaaactttgcagtgtggaAGCGAACTGCTCCAAGAGCATAGAGCAACaatataacatttgtaatctctgtttcggaacaactgagtcgattcacaggtgtgaaagcaccctcaataACTGAGGAGGggtgaagatttttatttttattttatttttttaagtgtagatCATGAGTCACAGCGCAGTTCCAGGTTGTAAGAATTTTAACTTCATAATGAAATTATAACTAGGCCCACAGAGATTCAGCATgggcagaattctgcagatttttaacccaTCAAAAATTCTTTTTACAACCCCAACCCCAAAAAAgttttttacttgagtaaatgtgtgtaaatctatatttattcagttttttattattattaccgtATTAacattgactaatgtgaaaatgttcatctgatttatgtacaatgcagtttgtaaagtagtattgtcttttagtagagatattatatgagagacttgctttgtttaccaaacaagtgccaaaaaaaaaaagagatggaaGAGAAACATTGTGACATACACAACAGAATATTGTGGAAGAATACCTCTGATCAATACTATAATGTTTTATGAATAACATTGATAATTGTGTAAAACTCTTTAGTTGACAAACAAAACCATGTTTTAAGTCTAAGCTGTTGTAATTAAGAATGTCACCGTGGCTATCCATCATatccaataaagaaaacaatattatttctaacctaatttttacaaaataaagacttatttcaatataaaa

Function

symbol description
znf1059 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZKSCAN7 (zinc finger with KRAB and SCAN domains 7).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8437 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZKSCAN7 (zinc finger with KRAB and SCAN domains 7).

Ensembl:

ensembl_id ENSDARG00000074009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053926 True 2644 mRNA 0.41 3 28814850 28822393

Neighbor

gene id symbol gene type direction distance location
XLOC_027379 NA coding upstream 104785 28693266 ~ 28710065 (+)
XLOC_027428 dre-mir-430b-10 coding upstream 105316 28709454 ~ 28709534 (+)
XLOC_027427 dre-mir-430c-1 coding upstream 105581 28709197 ~ 28709269 (+)
XLOC_027426 dre-mir-430a-4 coding upstream 105713 28709056 ~ 28709137 (+)
XLOC_027425 dre-mir-430b-6 coding upstream 105920 28708850 ~ 28708930 (+)
XLOC_027430 NA coding downstream 140381 28962774 ~ 28976560 (+)
XLOC_027431 si:dkey-13e3.1 coding downstream 175202 28997595 ~ 29000569 (+)
XLOC_027432 NA coding downstream 264620 29087013 ~ 29088974 (+)
XLOC_027433 NA coding downstream 331959 29154352 ~ 29155020 (+)
XLOC_027434 CR388132.2 coding downstream 343447 29165840 ~ 29290030 (+)
XLOC_027435 NA non-coding downstream 350047 29172440 ~ 29281146 (+)
XLOC_027436 NA non-coding downstream 383472 29205865 ~ 29208680 (+)

Expression


Co-expression Network