XLOC_002824


Basic Information

Item Value
gene id XLOC_002824
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28246835 ~ 28248743 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006070
ATGACAGATCTTTCTCAACAGTTTTTCTTGTGAATGGGAAGTTTCTAGTCATTTCAGACTTACAGGGAACCTTTATCTTGGTCGTTAACCTCAAACCGTCACTGATCATGTATAGTGACTCATTTGTCATATGGTCTTGTTTCTGAATTACTCTGCTTCTCAGCAGCCAATCATTTTTCACGTACTGAAGAAAATTCTGTGATTACATAAGAGTTGCTACATTAAGATTAAGACAGCATCGGCATTTCCAGAAAATGTGCAAGCTTATATTCTTGATGTGTTTTTTACATTCTGTCCTATACAACTGTCGATTAACTCATAAATGGTAGctcattatgttttattattaagtaaCTCAATGCAGTAACATTCataaaacaATTTAACAGGTGGTGTATGTTAACTCATAAATGGTAGCTCATTATATATGACTATATTAAGTAACCCAATGCAGTAACAttcttaaaacaatttaaaattgccaataaattattattattattattgttattcatttgGACAAAGCATATTTTGGTCAAGTTGGCATTTAATTTGTGTAACATTTTAAAGATTTACACTCCCGatcaaaagtttagggtcagttttttttcatgttttttttttgtttgtttgtttaaagaaaattattctgctCTTCAAGGgggcatttattaaatataaaatcaaaaacatatatttgttacaaatttaaataactgcattcttattgtttgtagtttcaaataaattgACATGATTATGGCTTTTATTACTatcaccattaataataatagttaatagtaacaataatgatgaatattagagtgatttctgagggagtaataaagctgaaaattcacg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006070 True 861 lncRNA 0.29 2 28246835 28248743

Neighbor

gene id symbol gene type direction distance location
XLOC_002822 rps6kb1a coding downstream 53193 28172344 ~ 28193642 (-)
XLOC_002821 med13a coding downstream 128800 28029578 ~ 28118035 (-)
XLOC_002820 ints2 coding downstream 217836 27977373 ~ 28028999 (-)
XLOC_002818 auts2a coding downstream 505026 27182704 ~ 27741809 (-)
XLOC_002825 CR392341.5 coding upstream 44100 28292843 ~ 28292959 (-)
XLOC_002826 cltca coding upstream 62288 28311031 ~ 28368913 (-)
XLOC_002827 btg3 coding upstream 122073 28370816 ~ 28380928 (-)
XLOC_002828 NA coding upstream 133342 28382085 ~ 28385569 (-)
XLOC_002829 CR392341.4 coding upstream 143683 28392426 ~ 28395620 (-)
XLOC_002819 AL844197.1 non-coding downstream 832473 27414246 ~ 27414362 (-)
XLOC_002817 BX248510.3 non-coding downstream 1076763 27169956 ~ 27170072 (-)
XLOC_002816 NA non-coding downstream 1084690 27157937 ~ 27162145 (-)
XLOC_002813 NA non-coding downstream 1244221 27000562 ~ 27002614 (-)
XLOC_002809 NA non-coding downstream 1344530 26901272 ~ 26902305 (-)
XLOC_002830 NA non-coding upstream 168908 28417651 ~ 28418179 (-)
XLOC_002831 CR392341.1 non-coding upstream 193997 28442740 ~ 28443740 (-)
XLOC_002832 CR392341.2 non-coding upstream 199163 28447906 ~ 28448868 (-)

Expression


Co-expression Network