XLOC_002813


Basic Information

Item Value
gene id XLOC_002813
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27000562 ~ 27002614 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005211
ATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGGTAAAACACTTTTCTAAAGTTATTTTATCGTTAAAGTGCTCTAACAACTGCTCTGTTTTAATGTTAAATCAGTAAATTGTTTTGTAACACCAAAACAAATACCTACTTGATTTTTAAAGTCGAGATCACATTAACAATACTAGTACATTGCTAAATGTCTACTACCGCCCATCATATcagaacttaatttaaaaaatgactatATGAAAGGATATTTTTATCATTGTTAACATAACCagtgttttatttagtatttttactgCTTATAATTGATGCTAATATAGTTTTTTGTTACCTCAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACATTAGTGGAATGGAAGGAGGAACCATCGACCTATGACAATATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAACGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtga
>TCONS_00006061
ttaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACGCTCCTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACATTAGTGGAATGGAAGGAGGAACCATCGACCTATGACAATATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGGAAAAAGTAAATGATGAGCACAAGTTACAAgaaaatggaGTAAACGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtga
>TCONS_00006060
ttaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACGCTCCTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACATTAGTGGAATGGAAGGAGGAACCATCGACCTATGACAATATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAACGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005211 False 826 lncRNA 0.34 4 27000562 27002404
TCONS_00006061 False 731 lncRNA 0.37 5 27000562 27002614
TCONS_00006060 True 736 lncRNA 0.37 5 27000562 27002614

Neighbor

gene id symbol gene type direction distance location
XLOC_002812 zgc:193742 coding downstream 1066 26991805 ~ 26999496 (-)
XLOC_002811 MRPL49 coding downstream 10687 26987108 ~ 26989875 (-)
XLOC_002810 znhit2 coding downstream 15331 26982254 ~ 26985231 (-)
XLOC_002809 NA coding downstream 98257 26901272 ~ 26902305 (-)
XLOC_002808 CR545465.2 coding downstream 105486 26892567 ~ 26895076 (-)
XLOC_002814 uqcc3 coding upstream 3652 27006266 ~ 27009584 (-)
XLOC_002815 cnih2 coding upstream 25405 27028019 ~ 27049170 (-)
XLOC_002816 NA coding upstream 155323 27157937 ~ 27162145 (-)
XLOC_002817 BX248510.3 coding upstream 167342 27169956 ~ 27170072 (-)
XLOC_002818 auts2a coding upstream 180090 27182704 ~ 27741809 (-)
XLOC_002807 NA non-coding downstream 128149 26836836 ~ 26872413 (-)
XLOC_002802 NA non-coding downstream 553391 26441052 ~ 26447171 (-)
XLOC_002793 NA non-coding downstream 1308892 25690872 ~ 25691670 (-)
XLOC_002819 AL844197.1 non-coding upstream 411632 27414246 ~ 27414362 (-)
XLOC_002823 NA non-coding upstream 1195302 28197916 ~ 28291989 (-)
XLOC_002824 NA non-coding upstream 1244221 28246835 ~ 28248743 (-)

Expression


Co-expression Network