XLOC_002815 (cnih2)


Basic Information

Item Value
gene id XLOC_002815
gene name cnih2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27028019 ~ 27049170 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005216
CGAGAGAGTAGGGCAGAAAATACAGGGACGGAGGAAGAGGAGACTGTTGAATGTAGTTGAGCATCGCATGCAGAGCCAATGAGAGACTGTGATGGGACCAAAGCTGACACCCAGAGCAAAGCGGACCACAGATTTCTGACATGGTGTCGACCCAGATTGATGGAAGGAAAATGAGGGGAGAGAGGACAGACGTAGACAGACTTGTGTCGCTGCTTCAGAAAACACAGATGGTAAACCGAGGACGTTCTTCCTCTGATGTGTCCACCAGATATTTTGTAAGGTGTTGTGCTGTAAATAAGGTGTGTGGACTCAGTGTACAGCACTAATCTTAGAGACGGGGGAGGAGAGCGATTCtccacatacatacagtacaaaccCCCTCTGccaatcagagagagagagagcagcagAGCGAGTGAAGAAACAGGGGAAACGGCTCCAGCAGTTATCTTAGGTGGACAGAGAGAAAGAATTACACTCGAACACGCCACACGGTACAAGACGCTTCAGCCAGCGGAGGCGGATAACTGGCCAGACGCCTCCTATCTGCAGCTCCAGACCAAGAAGATTCCTCACTAATTCTCTCCCGGCTTCATCCCAAGCTTGAAGAGGAGGAATAAGGGAAGAAGAAGGAAGAGGAAAGTGCTTTGTGACTTCCCTGAGAGTGAGGGCAAACGCCGTCAATAGAAAGACTGAGAGAGAGAGCAGGGGAAATCTCCCCCTCGCCCTCTCTCGACCCGGATCACCGTCAGGCTGGCTGGCACAGCCATGGCCTTCACCTTTGCGGCCTTTTGCTACATGTTAACACTCGTGTTGTGCGCCGCCCTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGCGCACAGACTTCAAAAACCCCATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATATTGAACATTGAGAGAATCTGCAACCTCCTCCGAAGGCTGGTTGTTCCAGAATATTCCATCCACGGGCTGTTCTGCCTGATGTTCATGTGTGCGGGGGAGTGGGTGACTCTGGGCCTTAACATCCCGCTGCTCCTCTATCACCTCTGGAGGTTTTTCCACCGTCCCGCAGATGGCTCTGAGGTTATGTACGATCCAGTGAGTGTGATGAATGCAGACATCCTGAATTACTGCCAAAAAGAGTCCTGGTGCAAGCTTGGCTTCTACCTTCTGTCCTTTTTCTACTATCTGTACAGTATGGTGTACGCTTTGGTCAGCTTCTAAGTGATCAAATGAAGGACGGAGGAGGACTCTAAAAAGAGAAGAAGAGAAACGACAGAACAAATACCGAACTATGTTGCGCTCTCCTCTCCTCATTTCCACAGACCTTGTTCAGCTCCTCCTCAGATCTCCTGGGTGGGGATGGACGATGGACAGATGTAGAAAACGGAGCCATCAAATGTAAAGCTGCCTCAATCACtgccattaaaaaaacacaaaaacaagagGACAGGTGGAACCAAATGAAAACGAGTGCAATAGAGAGCGAGAAGGAGGGGAAATGGTGAACAAAAGGCTCAGGCAGTGTGGATGTTTTGTAACACCGTTTCATTTCTCAAGGGCTGCTGAACATTTCCGCTGCTCATAGCAACAAAACGCTTCTTAACGCCGACGAAGAGACACACAACCAGACCAATACCGAATGTGTTTCCTTGAATTTAAAGTCAACAGATCTTGGACTTTACGTTGCAGTGTCCTTTCTTTTGCAGATAACAACCACTtcttttgtatgtgtgtgcgtgtgtgcgtcaGAGTATTTAATAACTGCTAAGTATTTGCTATTTCAGTATTCGTGGTAGATATACCTATACAATTACCCTGTATGTAGaggtataatataataatagattAAATATACGGCTCAGTTGTTGCAGTTCAGTCAGGGTAGTTCTCTTAGtgtccttaaaacaaacaaacaaacaaaaaaa
>TCONS_00005217
ACACTCGAACACGCCACACGGTACAAGACGCTTCAGCCAGCGGAGGCGGATAACTGGCCAGACGCCTCCTATCTGCAGCTCCAGACCAAGAAGATTCCTCACTAATTCTCTCCCGGCTTCATCCCAAGCTTGAAGAGGAGGAATAAGGGAAGAAGAAGGAAGAGGAAAGTGCTTTGTGACTTCCCTGAGAGTGAGGGCAAACGCCGTCAATAGAAAGACTGAGAGAGAGAGCAGGGGAAATCTCCCCCTCGCCCTCTCTCGACCCGGATCACCGTCAGGCTGGCTGGCACAGCCATGGCCTTCACCTTTGCGGCCTTTTGCTACATGTTAACACTCGTGTTGTGCGCCGCCCTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGCGCACAGACTTCAAAAACCCCATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATATTGAACATTGAGAGAATCTGCAACCTCCTCCGAAGGCTGGTTGTTCCAGAATATTCCATCCACGGGCTGTTCTGCCTGATGTTCATGTGTGCGGGGGAGTGGGTGACTCTGGGCCTTAACATCCCGCTGCTCCTCTATCACCTCTGGAGGTTTTTCCACCGTCCCGCAGATGGCTCTGAGGTTATGTACGATCCAGTGAGTGTGATGAATGCAGACATCCTGAATTACTGCCAAAAAGAGTCCTGGTGCAAGCTTGGCTTCTACCTTCTGTCCTTTTTCTACTATCTGTACAGTATGGTGTACGCTTTGGTCAGCTTCTAAGTGATCAAATGAAGGACGGAGGAGGACTCTAAAAAGAGAAGAAGAGAAACGACAGAACAAATACCGAACTATGTTGCGCTCTCCTCTCCTCATTTCCACAGACCTTGTTCAGCTCCTCCTCAGATCTCCTGGGTGGGGATGGACGATGGACAGATGTAGAAAACGGAGCCATCAAATGTAAAGCTGCCTCAATCACtgccattaaaaaaacacaaaaacaagagGACAGGTGGAACCAAATGAAAACGAGTGCAATAGAGAGCGAGAAGGAGGGGAAATGGTGAACAAAAGGCTCAGGCAGTGTGGATGTTTTGTAACACCGTTTCATTTCTCAAGGGCTGCTGAACATTTCCGCTGCTCATAGCAACAAAACGCTTCTTAACGCCGACGAAGAGACACACAACCAGACCAATACCGAATGTGTTTCCTTGAATTTAAAGTCAACAGATCTTGGACTTTACGTTGCAGTGTCCTTTCTTTTGCAGATAACAACCACTtcttttgtatgtgtgtgcgtgtgtgcgtcaGAGTATTTAATAACTGCTAAGTATTTGCTATTTCAGTATTCGTGGTAGATATACCTATACAATTACCCTGTATGTAGaggtataatataataatagattAAATATACGGCTCAGTTGTTGCAGTTCAGTCAGGGTAGTTCTCTTAGtgtcctt

Function

symbol description
cnih2 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Is expressed in basal plate midbrain region; brain; diencephalon; tegmentum; and telencephalon. Orthologous to human CNIH2 (cornichon family AMPA receptor auxiliary protein 2).

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-96 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Is expressed in basal plate midbrain region; brain; diencephalon; tegmentum; and telencephalon. Orthologous to human CNIH2 (cornichon family AMPA receptor auxiliary protein 2).

Ensembl:

ensembl_id ENSDARG00000043662

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005216 False 1955 mRNA 0.47 8 27028019 27049170
TCONS_00005217 True 1457 mRNA 0.47 6 27028043 27046639

Neighbor

gene id symbol gene type direction distance location
XLOC_002814 uqcc3 coding downstream 18435 27006266 ~ 27009584 (-)
XLOC_002813 NA coding downstream 25405 27000562 ~ 27002614 (-)
XLOC_002812 zgc:193742 coding downstream 28523 26991805 ~ 26999496 (-)
XLOC_002811 MRPL49 coding downstream 38144 26987108 ~ 26989875 (-)
XLOC_002810 znhit2 coding downstream 42788 26982254 ~ 26985231 (-)
XLOC_002816 NA coding upstream 108767 27157937 ~ 27162145 (-)
XLOC_002817 BX248510.3 coding upstream 120786 27169956 ~ 27170072 (-)
XLOC_002818 auts2a coding upstream 133534 27182704 ~ 27741809 (-)
XLOC_002819 AL844197.1 coding upstream 365076 27414246 ~ 27414362 (-)
XLOC_002820 ints2 coding upstream 928203 27977373 ~ 28028999 (-)
XLOC_002809 NA non-coding downstream 125714 26901272 ~ 26902305 (-)
XLOC_002808 CR545465.2 non-coding downstream 132943 26892567 ~ 26895076 (-)
XLOC_002807 NA non-coding downstream 155606 26836836 ~ 26872413 (-)
XLOC_002802 NA non-coding downstream 580848 26441052 ~ 26447171 (-)
XLOC_002823 NA non-coding upstream 1148746 28197916 ~ 28291989 (-)
XLOC_002824 NA non-coding upstream 1197665 28246835 ~ 28248743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12570121_12574061 CNIH2 coding CI01000304 null 12570059 ~ 12574061 (-)