XLOC_028370 (echdc3)


Basic Information

Item Value
gene id XLOC_028370
gene name echdc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 286425 ~ 287425 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055104
ATGCTTTTGCGGGGATTTTCAGAGCTGCTGAAGTGCAGAggagtgatgatgaaaatgaggaTGAAGATGAGCGGAGACTCTTCATCTCTGACCCTCACAGAGCAGCAGGGCGGAATCAGgaggatTATCCTGAATAACCCGAGGAAGAGAAACGCTCTGTCTCTGCAGATGCTGGAGTCTCTGAGGGAAAACATCCTGACAGACGCCGACAATCCAGAGCTGCATGTCATTATCATATCA

Function

symbol description
echdc3 Predicted to enable catalytic activity. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ECHDC3 (enoyl-CoA hydratase domain containing 3).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061201-12 Predicted to enable catalytic activity. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ECHDC3 (enoyl-CoA hydratase domain containing 3).

Ensembl:

ensembl_id ENSDARG00000099787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055104 True 240 mRNA 0.49 2 286425 287425

Neighbor

gene id symbol gene type direction distance location
XLOC_028369 si:ch73-252i11.1 coding downstream 9344 269443 ~ 277081 (-)
XLOC_028368 RERG coding downstream 45688 233812 ~ 240737 (-)
XLOC_028367 ptpro coding downstream 74711 190547 ~ 211714 (-)
XLOC_028366 ptpro coding downstream 92663 184863 ~ 193762 (-)
XLOC_028365 eps8a coding downstream 107915 151506 ~ 178510 (-)
XLOC_028371 mrps10 coding upstream 37603 325028 ~ 330748 (-)
XLOC_028372 dynlt1 coding upstream 99010 386435 ~ 390442 (-)
XLOC_028373 NA coding upstream 106126 393551 ~ 396819 (-)
XLOC_028374 rtcb coding upstream 389285 676710 ~ 685433 (-)
XLOC_028375 CU855889.2 coding upstream 414187 701612 ~ 734347 (-)
XLOC_028362 NA non-coding downstream 167231 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 185048 99991 ~ 101377 (-)
XLOC_028359 NA non-coding downstream 211817 73430 ~ 74608 (-)
XLOC_028358 NA non-coding downstream 213767 71463 ~ 72658 (-)
XLOC_028357 NA non-coding downstream 221722 56025 ~ 64703 (-)
XLOC_028376 NA non-coding upstream 436405 723830 ~ 732484 (-)
XLOC_028383 NA non-coding upstream 612537 899962 ~ 904022 (-)
XLOC_028385 NA non-coding upstream 632327 919752 ~ 921761 (-)

Expression


Co-expression Network