XLOC_028405 (pwp1)


Basic Information

Item Value
gene id XLOC_028405
gene name pwp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1825839 ~ 1839352 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055152
CTGTTCTACCTTTTTCTTTAGGACAGTCAAAAATTACACCATGAAAAAATCCTCGTCGACATATAACATCAAGTCcttctttaaaatgataattttttttataaaacatctataattaataaaatttctAATTAAAAATCACTTATTCCTTGTTTTGATTGACCGATGGCGTGACGTCATAGCTGTGCGCCGCAGTGACGACGGCAGCCTAGAGAATCCTCGTGTTGTGTCATTTTATCACTATAAACATACACAAATCAGTCATGAGCGCTCAAATAACGTGTGTCGGATGGGTGAAGCGTGGAGTCGCCAAAGAAACGCCGGATAAAGTAAGTGTCCTCCGCGATCGTGTTCAAACTGCATGTTTCTGTGGATCTGCACACGTGTTTGGGGTTTTAACGCGAATAAAATCATCATCACAGGTGGAGCTGAGCAAAGAAGAGCTGCAGCGCATCATTTCAGAGGCCAAAGAGGAGTTAAGGGATCgagatgaagaggaggaggaagatgagGCTGATGAAGGTGTGGTCAGTGGTCTGGATAGTAAAGAAGAGGCTTCAGCTCCTGCGACTGTTGAAGaaggaataaaaaagaaagaggaTGGAAATGAGGAAGACGATGAGCTTGCAGAGTATGACCTAGACAAGTATGATGAAGAGGACATCGCTACATCAAATCTTGGAGACAGTTTAGCAGGATTGACTGTCTTTGGCACCAATGAAGAGGATCCATACGTCACCATCAAAGACAccGATCAGTACGAGCGTGAGGATTTTCAGATTAAACCCACTGATAACCTGATTTTGGCTGGGCGAGCTGAGAAAGAATGCTGCAATCTGGAGATTCATgtgTATAATTCAGAAGAAGACTCTCTATATGTGCACCATGACATCCTGCTGCCCGCGTATCCCCTGTGTGTGGAGTGGCTGAACTTTGACCCAAACCCAGAAGAACAACAAGGGAATTACGCAGCCGTGGGAAACATGACGCCTGTGATTGACGTTTGGGATCTAGATGTTGTCGACTGTTTAGAACCGGCTTTTTCACTCGGCagcaagaaagagaaaaagaagaagaagaaagccAAGAAGGCTGCAGAGCCCATTGAAGGCCACACAGATGCTGTGCTGGACCTGTCCTGGAACAGACTGGTCAGGAATGTTCTAGCGAGCGCGTCTGCGGATGAGACGGTGATACTGTGGGATCTGGAGAAAGGCAAACCAGCGGCAACACTCGCCAAACACACTGATAAGGTTCAGACGCTGAAGTTCCACCCATTTGAGGCTCAAACTCTCATCAGTGGATCATTTGACAAGTCTGTGATCCTGTACGATTGTCGCAGTCCAGATGACAGCCACCGGATCTGGCGCTTCAGTGGTCAAGTTGAGAGAGTTACCTGGGACCATTTCTCTCCATGTAACTTCCTGGCGAGTACAGAAGACGGCTTCATTTATTGTCTGGACGCTCGATCTGATAAACCCGTGTTCACACTGAGAGCTCATGATGGAGAGGTGTCAGGAATGGACCTGAGCAGTCAGATCCGCGGCTGTCTGGTCACATGTTCAGCTGACAAACATGTGAAAATCTGGGACATTCTGGGAAACAAACCCAACCTGATCCACTCCAGAGACATGAAGATGggtgtGTTATTCTGTGGCTCCTGCTGTCCGGATCTGCCATTCGTCTATGcgtttggaggacaaagggaagGACTGCGTGTCTGGGACATCAGCGATGTGGCTGCCGTTGCGGAGGTTTTCGGCAGCCGGGAGCGATTGGTGGCTAACACAGTGTCTGGAGCATCCAGCAGTGACATGGATGTCTCTTAATCATCAACAAACCAACAACAATACACTGAATTACTGAAGACTGAGAATCACAGGCCACTGCTTCATAATCAATGACGTGAACAGCAGAAGTCCTGATTTATCAGATGGAGTGTGATGGCAGGTTTCTCACTATGTTTATTTGATATATGAATAGTGTATATATCAAATGTCTGACACCGAACACACAGTGCTATCCTTAAAGAGGGAATGTATGTCTTTTCTAAGCTTACAGGTTGCAACTTGCTCTCCATATTTCCTCTTTTTAGGAAGTGTATAAAGATTTGCGATTAATTCTTATGCTGATTTTCCATGTCTGGGAGTGTGGAATTGCTGTTGTTTTAGAAATGGCAGTAAATAAAACGATGGATTACACAGATTATGGTCTTGTTTTGTATTCAGGAATGCTTATTAATGAATTTAAgtcatcattaattattttttgattgtttgttttactCGTTTATGTTTTtacatgtataaaatgtatttttaagtgtcagttttagttattttagcaCATCAACTTTAAAAAGTATAACTTTCTGTTGTGAGAACAACAGAATTTCATCGTTTCTTACCTGACGGTAACTCTCCGACCCTTCAGTAACTTTCACTCACTTCAGCATTGGAAAACATGTATATCCAcctataaaagataaataaataaatgtataaaactgacattataaaaataaacattatataaaacaaagttaaacttttgtaaaaattaaccatttgtattttaatatttcaatatacagttgaagtcagaattattagccccccctatttatttttttccatgttttctgtttaacagagcagattttctcaacacatttctaatcataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtaaataatatttgactagatatttttcaagacacttgtatatagcttaaagtgacatttaaaggcttaactaggcaggttagggtaattaggcaagttattgtacaacgatggtttgttctgtagactatcggaaaaaaatagccttaaaaggctaataattttgtccttaaaatggtgtttaaaaaattaaaaactgattttattccagccaaaataaaacaaatcagactttctccagaagaaaaaatattatcagacacactgtgaaaatttctttgctctgttaaacatcatttaggaaatatttttaaaagaaactcaaaggggggctaataattctgactttagctgtaaATATTTGTGGCATATTGATTACAATTTGTTTATAACCACAGTTTATAACAATTAACacgattattttttattattaaattaacaaaaacttTAAACCAATATGTTTTTGTGGTAACCACAGTTTCACTTAATGGTTGCAATGGTTAACATATTTTGACTTGGTCAGTAATAACTTATACAGTAAAGGCACATTTTCATAAGGGAAGTTTGTGTTGGCACCTtaattcctgtttttttttatcccaaTGTTTAAGACACATGTAATAATTAAATCGTTTCCCATAACATTTAAGGTTGTTATGACTTTTTTCTGATacaa
>TCONS_00055153
GACCGATGGCGTGACGTCATAGCTGTGCGCCGCAGTGACGACGGCAGCCTAGAGAATCCTCGTGTTGTGTCATTTTATCACTATAAACATACACAAATCAGTCATGAGCGCTCAAATAACGTGTGTCGGATGGGTGAAGCGTGGAGTCGCCAAAGAAACGCCGGATAAAGTGGAGCTGAGCAAAGAAGAGCTGCAGCGCATCATTTCAGAGGCCAAAGAGGAGTTAAGGGATCgagatgaagaggaggaggaagatgagGCTGATGAAGGTGTGGTCAGTGGTCTGGATAGTAAAGAAGAGGCTTCAGCTCCTGCGACTGTTGAAGaaggaataaaaaagaaagaggaTGGAAATGAGGAAGACGATGAGCTTGCAGAGTATGACCTAGACAAGTATGATGAAGAGGACATCGCTACATCAAATCTTGGAGACAGTTTAGCAGGATTGACTGTCTTTGGCACCAATGAAGAGGATCCATACGTCACCATCAAAGACAccGATCAGTACGAGCGTGAGGATTTTCAGATTAAACCCACTGATAACCTGATTTTGGCTGGGCGAGCTGAGAAAGAATGCTGCAATCTGGAGATTCATgtgTATAATTCAGAAGAAGACTCTCTATATGTGCACCATGACATCCTGCTGCCCGCGTATCCCCTGTGTGTGGAGTGGCTGAACTTTGACCCAAACCCAGAAGAACAACAAGGGAATTACGCAGCCGTGGGAAACATGACGCCTGTGATTGACGTTTGGGATCTAGATGTTGTCGACTGTTTAGAACCGGCTTTTTCACTCGGCagcaagaaagagaaaaagaagaagaagaaagccAAGAAGGCTGCAGAGCCCATTGAAGGCCACACAGATGCTGTGCTGGACCTGTCCTGGAACAGACTGGTCAGGAATGTTCTAGCGAGCGCGTCTGCGGATGAGACGGTGATACTGTGGGATCTGGAGAAAGGCAAACCAGCGGCAACACTCGCCAAACACACTGATAAGGTTCAGACGCTGAAGTTCCACCCATTTGAGGCTCAAACTCTCATCAGTGGATCATTTGACAAGTCTGTGATCCTGTACGATTGTCGCAGTCCAGATGACAGCCACCGGATCTGGCGCTTCAGTGGTCAAGTTGAGAGAGTTACCTGGGACCATTTCTCTCCATGTAACTTCCTGGCGAGTACAGAAGACGGCTTCATTTATTGTCTGGACGCTCGATCTGATAAACCCGTGTTCACACTGAGAGCTCATGATGGAGAGGTGTCAGGAATGGACCTGAGCAGTCAGATCCGCGGCTGTCTGGTCACATGTTCAGCTGACAAACATGTGAAAATCTGGGACATTCTGGGAAACAAACCCAACCTGATCCACTCCAGAGACATGAAGATGggtgtGTTATTCTGTGGCTCCTGCTGTCCGGATCTGCCATTCGTCTATGcgtttggaggacaaagggaagGACTGCGTGTCTGGGACATCAGCGATGTGGCTGCCGTTGCGGAGGTTTTCGGCAGCCGGGAGCGATTGGTGGCTAACACAGTGTCTGGAGCATCCAGCAGTGACATGGATGTCTCTTAATCATCAACAAACCAACAACAATACACTGAATTACTGAAGACTGAGAATCACAGGCCACTGCTTCATAATCAATGACGTGAACAGCAGAAGTCCTGATTTATCAGATGGAGTGTGATGGCAGGTTTCTCACTATGTTTATTTGATATATGAATAGTGTATATATCAAATGTCTGACACCGAACACACAGTGCTATCCTTAAAGAGGGAATGTATGTCTTTTCTAAGCTTACAGGTTGCAACTTGCTCTCCATATTTCCTCTTTTTAGGAAGTGTATAAAGATTTGCGATTAATTCTTATGCTGATTTTCCATGTCTGGGAGTGTGGAATTGCTGTTGTTTTAGAAATGGCAGTAAATAAAACGATGGATTACACAGATTATGGTCTTGTTTTGTATTCAGGAATGCTTATTAATG
>TCONS_00055154
GCCGCAGTGACGACGGCAGCCTAGAGAATCCTCGTGTTGTGTCATTTTATCACTATAAACATACACAAATCAGTCATGAGCGCTCAAATAACGTGTGTCGGATGGGTGAAGCGTGGAGTCGCCAAAGAAACGCCGGATAAAGTGGAGCTGAGCAAAGAAGAGCTGCAGCGCATCATTTCAGAGGCCAAAGAGGAGTTAAGAAGGGAAACTCTTGATATCTCCAGGGATCgagatgaagaggaggaggaagatgagGCTGATGAAGGTGTGGTCAGTGGTCTGGATAGTAAAGAAGAGGCTTCAGCTCCTGCGACTGTTGAAGaaggaataaaaaagaaagaggaTGGAAATGAGGAAGACGATGAGCTTGCAGAGTATGACCTAGACAAGTATGATGAAGAGGACATCGCTACATCAAATCTTGGAGACAGTTTAGCAGGATTGACTGTCTTTGGCACCAATGAAGAGGATCCATACGTCACCATCAAAGACAccGATCAGTACGAGCGTGAGGATTTTCAGATTAAACCCACTGATAACCTGATTTTGGCTGGGCGAGCTGAGAAAGAATGCTGCAATCTGGAGATTCATgtgTATAATTCAGAAGAAGACTCTCTATATGTGCACCATGACATCCTGCTGCCCGCGTATCCCCTGTGTGTGGAGTGGCTGAACTTTGACCCAAACCCAGAAGAACAACAAGGGAATTACGCAGCCGTGGGAAACATGACGCCTGTGATTGACGTTTGGGATCTAGATGTTGTCGACTGTTTAGAACCGGCTTTTTCACTCGGCagcaagaaagagaaaaagaagaagaagaaagccAAGAAGGCTGCAGAGCCCATTGAAGGCCACACAGATGCTGTGCTGGACCTGTCCTGGAACAGACTGGTCAGGAATGTTCTAGCGAGCGCGTCTGCGGATGAGACGGTGATACTGTGGGATCTGGAGAAAGGCAA

Function

symbol description
pwp1 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1049 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

Ensembl:

ensembl_id ENSDARG00000015921

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055152 False 3416 mRNA 0.39 14 1825839 1839352
TCONS_00055153 False 1990 mRNA 0.47 15 1827012 1839192
TCONS_00055154 True 962 lncRNA 0.48 9 1831738 1839164

Neighbor

gene id symbol gene type direction distance location
XLOC_028404 mrpl42 coding downstream 1003 1821637 ~ 1824836 (-)
XLOC_028403 ube2nb coding downstream 7524 1809562 ~ 1818315 (-)
XLOC_028402 nudt4b coding downstream 24220 1788748 ~ 1801619 (-)
XLOC_028401 dnajc2 coding downstream 40719 1766333 ~ 1785120 (-)
XLOC_028400 tm7sf3 coding downstream 68379 1732825 ~ 1757460 (-)
XLOC_028406 NA coding upstream 9308 1848660 ~ 1855771 (-)
XLOC_028407 ano6 coding upstream 39221 1878573 ~ 1914228 (-)
XLOC_028408 NA coding upstream 76434 1915786 ~ 1979057 (-)
XLOC_028409 si:ch73-177h5.2 coding upstream 81659 1921011 ~ 1930024 (-)
XLOC_028410 FAR2 coding upstream 149108 1988460 ~ 2036620 (-)
XLOC_028393 NA non-coding downstream 566098 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 591603 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 789793 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 802139 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 812744 1010960 ~ 1013095 (-)
XLOC_028417 NA non-coding upstream 552720 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 606405 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 824816 2664168 ~ 2666870 (-)

Expression


Co-expression Network