XLOC_028428


Basic Information

Item Value
gene id XLOC_028428
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 3306145 ~ 3308415 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057991
ATAAGGTTGATTGTCTTGCCTTACAAACATTTTGAAGTGTATAATTGTAATTGAAATTCTATAATAAAGTGTCAGCATGATGTTGTATATCAATAAACCTTAACTTGTTTTAAATTCTGAACATTCATATTTGGTCTGTCATAGTTTTATTTAACATTGtaactatctacctacctacctaactAACTACTAGAACATATTTCGAtgactattaatattattactagtGCGTTACAAttgttatatatgtataatatatgtaaaaACGTCTGCATTCGCATTATATTCAGGAGTCCACATTCTCTGAAAGCCCATCAGTGATTGTACAACAAGCAAATAGGTGTAAAAAACACAAGTGAAACTGGACAAGGATACAAACAAACACCTGCGATCACATGACCCATGATGTAATGATGATGTCATGTGATCATGCAGGCATTCCGGGCCTCGGGTTTACTTTGGCTTGTGTCTTTGCTTCAGTGTATAATATCTGTATTTCAGAAAGGATTGCACTTCGTTTAGTGTGTTAATGTCTCAAATGTTCATTATGGGATGCAGGAATCACAAATCGTTCAGGGTCCGGAGATGTGGGCAtttaagaggaaaaactgaaaagTCTCCTGCTGTTGCTGATGAATCCTGGAGAACCGCCATTAGAGTCCATCTGCTGCCGGACACACAGACCACACGCTCATATAACctactgaaaaacagcatatCCACAGTACAAATGAGATTAAAATACATATTAGGAGGAAAAGGAACGCAGAAATGTAGCCTGGGAtatgttagcaacatgttaaatcacattaacagtgtgctAAAAACATGGTACAAACAAACCGCAAGTGTTGAAttgttaaaatgcaataaaacatgCACTTTAACCAGCAATCAGCAATATTAAAAACGTTAGCATTGTTCTAAAATGTGCCAATAACATGTTTAAAACatCTTAGCActttgctaaaacatgctagtgaCCTGTAACATGCTAAATATATTAACCAtagcatttttaaacaatttttaaacatACCTAACTTGCAAGTTTGCAACGACATATTAGCACTCTGCTAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057991 True 1083 lncRNA 0.35 2 3306145 3308415

Neighbor

gene id symbol gene type direction distance location
XLOC_028427 NA coding downstream 48581 3250774 ~ 3257564 (-)
XLOC_028426 plekha5 coding downstream 160786 2948063 ~ 3145359 (-)
XLOC_028425 aebp2 coding downstream 360839 2923199 ~ 2945306 (-)
XLOC_028424 pde3a coding downstream 438033 2752852 ~ 2868112 (-)
XLOC_028423 slco1c1 coding downstream 578572 2674898 ~ 2727573 (-)
XLOC_028429 pik3cg coding upstream 34756 3343171 ~ 3353595 (-)
XLOC_028430 NA coding upstream 83806 3392221 ~ 3405250 (-)
XLOC_028431 NA coding upstream 99296 3407711 ~ 3415152 (-)
XLOC_028432 CU928073.1 coding upstream 137596 3446011 ~ 3456102 (-)
XLOC_028433 si:dkey-61f9.1 coding upstream 484535 3792950 ~ 3805992 (-)
XLOC_028422 NA non-coding downstream 639275 2664168 ~ 2666870 (-)
XLOC_028418 NA non-coding downstream 826425 2445757 ~ 2479720 (-)
XLOC_028417 NA non-coding downstream 865970 2392072 ~ 2440175 (-)
XLOC_028408 NA non-coding downstream 1327088 1915786 ~ 1979057 (-)
XLOC_028435 NA non-coding upstream 505203 3813618 ~ 3819984 (-)
XLOC_028436 NA non-coding upstream 512443 3820858 ~ 3821848 (-)

Expression


Co-expression Network