XLOC_028477 (tmem63a)


Basic Information

Item Value
gene id XLOC_028477
gene name tmem63a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5665182 ~ 5691257 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055274
GTGTAGTTAAACTTAGCTGACAGCCCAACCGGTTCTGCACAGTCCTCTCGCGGAAAACAAATCCACCGAGATGTCCTCCTGGTGGGGGCAGCTCTCTGAGTCGGTGAATAACAGCACTGTTCGTCTGGACAACACTAGCTGCTTCAGTTCCACGCAGAGCACCGTACTGAAGGGAGTGAATTTTGGAGGAATTCCTGTCGTTCTGCTGCTTGACTTTACAGTCTTCATATTGCTGCTTTCGATCTTCACTCTGATCAGAAGAAAACTGTGGGATTATGGGAGACTCGCTCTTGTTGCGGAGACTGATGTGTTTGGCGATGGTAGAAAACGGCGTTACAGTAGATTGACGTCATCCATGTCTGTTGAGGAGCCTGAATATGAAAAGGGTTGTTGCTCCTGGCTCACGTTTATCGTCAATATGGAtgAGACTTTGGTGCAGGAGAGATGTGGTGTGGACGCAGTACATTATCTGTCCTTTCAGAAGCATCTGGTCACTCTGCTCTTGATCATCTGTGTGCTGTCTGTGTCCATCATCCTGCCAGTCAATCTATCCGGGGATCTGCTggGCACTGATCCCTACAATTTTGGACGGACCACCATAGGGAATCTTCAGCATGATGATAAGCTGCTTTGGCTGCACACTGTGTTTGCAGTTCTGTATCTGATGATCACGGTGTTCCTGCTGAGGCGCTACACCTCGAAAATGAAGGGAACCAAGAGAGAGATTGTCAGAAACACCCTGTTTGTGAGGCCTTTACCCAGAACATCCACTGATGACAGTATAAAAACTCACTTTATGGAGGCCTACCCGTCATGTCACGTGACTAGTGTTAACTTGTGCTATGATGTTGCCAAACTGATTGATGTGAACAAAAATAGAAAACGGGCTGAAAAGAACCTGCGGCATTATAATAGGATACTGCAGCAACTGGGACGACGTGAGCTTATTAACCCTCGTCCATGCAGCCATTTATGCTGCTGCTGCCAACGCTGTCAGGGTTGTGAAGAGGTTGACGCTATAGAGTTCTACAGCTCACAAGAAGCTGCTTTACATGAAGAGGAAGTGAGACTGAAGCAGGGAGAGCTGCATCCCCTGGGCATGGCTTTCGTCACCCTGCAAAATGAGTATATGGCCACTTATATTCTGAAAGATTTCAACGCTCTTGAGTGTGGAGGCGGAGCCAGGGGTGTGGTTGGAGAAGAAATGAGCAGGGGGATTAAATGTGGGTGTGGCCGGGAGCCTCAGCCGTCCACTAGAAGTGCAGAGCTGGGGGTGCCGAAATGGAAAGTGAATTATGCATCTCACCCGCATAATATCTACTGGGAGAATTTATCAGTTCGTGGCTGGCGTTGGTTGCTGCGCTGTGTGTTGCTGAATACCGCACTCTTCGTCCTCCTGTTCTTCCTCACAACGCCCTCCATCATCATCAGCACCATGGACAAGTTTAACGTCACCATGCCCATTTACTATCTCAATAGTCCCATTATCAGCCAGTTCTTCCCCACTCTGATGCTGTGGACTTTCTCTGCCCTGTTGCCCACTATAGTCTATTACTCTACACTGGGAGAAGCTCATTGGACCAGGTCCAGTGAGAATATGAGCATGATGTACAAACTGTACACCTTCCTGATCTTCATGGTGTTGATTTTGCCATCGCTGGGCCTCACCAGTTTGGCCGTGTTTTTCCGCTGGTTGTTTGATAAGCAGTCTGAAGGCCAGCTGAGGTTTGAgtgtgtgTTTCTAGCTGATCAGGGTGCGTTCTTTGTGAATTATGTGATCGCGGCGGCTCTGGTGGGCTCTGGTATGGAGCTGCTGCGGTTGCCAGGTTTACTGCTCTACATTGTGCGTTTGGCACTTGCAAGTTCAGCTGCTGAGAGGAAATATGTTAAACAGAATCAAGCGTACGAGTTTCAATACGGCGCGATGTATGGATGGACTCTGTGTGTGTTCACGGTCATCATGGCATACAGCATCGTCTGTCCTCTCATCGTCCCCTTCGGTCTGCTGTATCTGCTGCTGAAACACCTGGTGGACAAACACAACTTGTATTTCGCTTACCTGCCTGCCCGCCTTGATCGCCAGGTTCACCTGGGAGCTGTCAATCAAGCACTGGCTGCACCAATCATATGTCTGATCTGGCTTTATTTCTTCTCTGTGCTCAGGACAGGCTTCATGACGGGCACCTCATTGTTCACGCTAGTGGTTTTGTGCATTACCGTCTTTATCTGCATAAGTTACACCTGCTTTGGACACTTCAAATACCTCAGTCCACACAACTACAATGTTAAAGAGGAAGATGAAGATGCTGATATAGTTTCAGAGAACTCATCCGGATTGGTTTATCTTCCTAAAGTGTTGAACCCTGATGCATCGTTTGAGTCTTCAGACGAGTGCAGCCCTAGTCATTCATACGGGACGACAGACATAAGTCCACAATTCATAGGGACTGAGGAAAGCTCTCCAGACTCGGATATATAGCAGCAATAATCAGGCGGCGTATCGGACAATCGCTGGTCTGGAGGAAACAGTTATTCGCAGATTTAGGAGCTGGAGAGGTCAGTTTGGAGACGGAGGGGGATTGACTGAAAAAGATTCTGAAGGGAAATAACACTCATGTTTTTCATGAACACTGAAAGACCAGAGGAACAATAATCATAACCTGCCATATAACAAATATTAAGGATTTTTCGGGGGAATCAGTACTTTATAACCAAAGAATTGCCAGTTCAAGACACAGTCCAAACATTTCTGCATTGCAGAAGCAGCTTTGCCAGTGAGCGCTTTCCAAATAGCACAAATATAACATCAAAAATTATTTGAACACTTGATGCTTGTGCCTTGTTGGAGACAACTTAACACACTTTATAACTGtacgtttttgtgtgtgtgatgcattGGGATTTTTTTAAAGCCAAGTTTTATACAGATGTGTTAATATATTGATATTAACAAACAGA

Function

symbol description
tmem63a Predicted to enable calcium activated cation channel activity. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human TMEM63A (transmembrane protein 63A).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005227 calcium activated cation channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-107 Predicted to enable calcium activated cation channel activity. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human TMEM63A (transmembrane protein 63A).

Ensembl:

ensembl_id ENSDARG00000031956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055274 True 2958 mRNA 0.47 23 5665182 5691257

Neighbor

gene id symbol gene type direction distance location
XLOC_028476 rsph9 coding downstream 13152 5645251 ~ 5652030 (-)
XLOC_028475 vegfab coding downstream 67380 5568688 ~ 5597802 (-)
XLOC_028474 NA coding downstream 112000 5545002 ~ 5553182 (-)
XLOC_028473 BX324164.5 coding downstream 126430 5498230 ~ 5538752 (-)
XLOC_028471 NA coding downstream 205713 5421746 ~ 5459469 (-)
XLOC_028478 NA coding upstream 1913 5693170 ~ 5745885 (-)
XLOC_028479 NA coding upstream 44113 5735370 ~ 5737345 (-)
XLOC_028480 NA coding upstream 47753 5739010 ~ 5739938 (-)
XLOC_028481 faxca coding upstream 59597 5750854 ~ 5764255 (-)
XLOC_028482 ccnc coding upstream 73229 5764486 ~ 5775507 (-)
XLOC_028472 NA non-coding downstream 223228 5428318 ~ 5441954 (-)
XLOC_028462 NA non-coding downstream 697471 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 702290 4940467 ~ 4962892 (-)
XLOC_028487 NA non-coding upstream 422184 6113441 ~ 6116670 (-)
XLOC_028488 NA non-coding upstream 486329 6177586 ~ 6252483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location