XLOC_028478


Basic Information

Item Value
gene id XLOC_028478
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5693170 ~ 5745885 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057319
TCTCCGTAAAGCTGTTTAAGAATCCAGTCACATTCTAGACCGGCAGTAaaagagctctctctctctctctccccctccacctctctctctctctctctctctctctctctctctctctcctcctttaTCCGTTTCTCCTTCCCTGTAGCTCTTTCACACTGTATTCTCTGTGcgcctcctctctctctctctctctctctctctctctctcagtgcaGCTGATAAAGCCTCTCTCTGCGTTTCCAGGTCTGCCACCCTCACATCAGCCAGACACTGATCTCTGCCAAGCTGTCAATCAAACCCGACTGATGCGCAGACTCTGACTGTTCATTTGCCACTCATGCCAGTCTGTGGACTACGCTGATTAGCAGCAGTTTTCCTCAGCTGTCAACCTGACTGAAAACAATCAAAGCCTCTTCCATATACCCTCAatcagcatctctctctctccccgagCGCCGCCGCCGCAATCAGCTGCTGATTAGGGATCCTGCGGGCCTCCTCCAGCCGGCAGCGCAGGGTTAATTCGGGCGTCAGATGGTGTCGCGCGGGGCCACGGAGAGGGGAATGAGAACGTGAGCTGGATGATATTGGATGGATAAAGCCGCCCTGTCAATCACTGGGGATTCACTGTAAAGGCTCAAAGACTCTCTTCATCttgctcttctctctctctctccctttctctccaGATAATCTATTTTTGCCATGTGTGGATGCTCCAATTAAATCAGATACTGGTCAGATATTTTGGCTATTTTTTGAAAATTGAAAGCAATTAATTTATGTGTTGGATTTGCCTTGCATTGCAgaggatattttttatttgattataatgttattgttgcttttatatgc
>TCONS_00058035
ATTATAGGAGAGAAGTACTAGGCTACTTCTGAGTGTTTTCTGAGTACTCCAAAGTACACTTCAAAACCTTTTTAGATAATTCGAACACGTTCCATGAACGTTATACAGTAGCATGACGTGTTTGTGTTGACCAGAAAACTAACAAAGATTCTATCAAGTCAATAACAGAACGTTCGAAATATTTCCGGGAACTTTGCTTGTTAGCCAACCGTGACTTTAATTTGAACTGGTTTGTTTGAGGCACAACAAGTAATGTCTACGTTAATATTTGGCTTAAGGGAACACAACGGATTTGAAGTGAGGTTTTAAAGTTGATCTACGGCCCCGAGAGACTCATCTAAACATGTTTTATGTTCACCTGCACAACACGACAACTTTCAAAGTGTTGGTCAGCTGTGAGCGAAGGCCTATTATACTGCTGATAAAAGAGGGCCAGTTCAGCGCTCGCTGTTAAAGCCCCCACTGCGCACACGCACAACTCAGCTCTTTCACACTGTATTCTCTGTGcgcctcctctctctctctctctctctctctctctctctcagtgcaGCTGATAAAGCCTCTCTCTGCGTTTCCAGGTCTGCCACCCTCACATCAGCCAGACACTGATCTCTGCCAAGCTGTCAATCAAACCCG
>TCONS_00058036
CACGTTGCTGACATTATAGGAGAGAAGTACTAGGCTACTTCTGAGTGTTTTCTGAGTACTCCAAAGTACACTTCAAAACCTTTTTAGATAATTCGAACACGTTCCATGAACGTTATACAGTAGCATGACGTGTTTGTGTTGACCAGAAAACTAACAAAGATTCTATCAAGTCAATAACAGAACGTTCGAAATATTTCCGGGAACTTTGCTTGTTAGCCAACCGTGACTTTAATTTGAACTGGTTTGTTTGAGGCACAACAAGTAATGTCTACGTTAATATTTGGCTTAAGGGAACACAACGGATTTGAAGTGAGGTTTTAAAGTTGATCTACGGCCCCGAGAGACTCATCTAAACATGTTTTATGTTCACCTGCACAACACGACAACTTTCAAAGaaccgttcttcgTTGGACTCAAATCCTGTCGTcatagtcaactcctctctgcatctcaagtccgccgatgtacatgCCGAGCTGCTGGGTAAACTGGTAGCAGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057319 False 858 lncRNA 0.48 2 5693170 5708334
TCONS_00058035 False 639 lncRNA 0.44 3 5708031 5745873
TCONS_00058036 True 500 lncRNA 0.41 2 5714739 5745885

Neighbor

gene id symbol gene type direction distance location
XLOC_028477 tmem63a coding downstream 1913 5665182 ~ 5691257 (-)
XLOC_028476 rsph9 coding downstream 41140 5645251 ~ 5652030 (-)
XLOC_028475 vegfab coding downstream 95368 5568688 ~ 5597802 (-)
XLOC_028474 NA coding downstream 139988 5545002 ~ 5553182 (-)
XLOC_028473 BX324164.5 coding downstream 154418 5498230 ~ 5538752 (-)
XLOC_028481 faxca coding upstream 4969 5750854 ~ 5764255 (-)
XLOC_028482 ccnc coding upstream 18601 5764486 ~ 5775507 (-)
XLOC_028483 pgm3 coding upstream 39085 5784970 ~ 5795309 (-)
XLOC_028484 foxm1 coding upstream 62079 5807964 ~ 5831522 (-)
XLOC_028485 slc5a8 coding upstream 104340 5850225 ~ 5863906 (-)
XLOC_028471 NA non-coding downstream 233701 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding downstream 251216 5428318 ~ 5441954 (-)
XLOC_028462 NA non-coding downstream 725459 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 730278 4940467 ~ 4962892 (-)
XLOC_028487 NA non-coding upstream 367556 6113441 ~ 6116670 (-)
XLOC_028488 NA non-coding upstream 431701 6177586 ~ 6252483 (-)
XLOC_028491 NA non-coding upstream 830892 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1274565 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1439310 7185195 ~ 7185311 (-)

Expression


Co-expression Network