RNA id: TCONS_00057319


Basic Information

Item Value
RNA id TCONS_00057319
length 858
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_028478
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5693170 ~ 5745885 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCCGTAAAGCTGTTTAAGAATCCAGTCACATTCTAGACCGGCAGTAaaagagctctctctctctctctccccctccacctctctctctctctctctctctctctctctctctctctcctcctttaTCCGTTTCTCCTTCCCTGTAGCTCTTTCACACTGTATTCTCTGTGcgcctcctctctctctctctctctctctctctctctctcagtgcaGCTGATAAAGCCTCTCTCTGCGTTTCCAGGTCTGCCACCCTCACATCAGCCAGACACTGATCTCTGCCAAGCTGTCAATCAAACCCGACTGATGCGCAGACTCTGACTGTTCATTTGCCACTCATGCCAGTCTGTGGACTACGCTGATTAGCAGCAGTTTTCCTCAGCTGTCAACCTGACTGAAAACAATCAAAGCCTCTTCCATATACCCTCAatcagcatctctctctctccccgagCGCCGCCGCCGCAATCAGCTGCTGATTAGGGATCCTGCGGGCCTCCTCCAGCCGGCAGCGCAGGGTTAATTCGGGCGTCAGATGGTGTCGCGCGGGGCCACGGAGAGGGGAATGAGAACGTGAGCTGGATGATATTGGATGGATAAAGCCGCCCTGTCAATCACTGGGGATTCACTGTAAAGGCTCAAAGACTCTCTTCATCttgctcttctctctctctctccctttctctccaGATAATCTATTTTTGCCATGTGTGGATGCTCCAATTAAATCAGATACTGGTCAGATATTTTGGCTATTTTTTGAAAATTGAAAGCAATTAATTTATGTGTTGGATTTGCCTTGCATTGCAgaggatattttttatttgattataatgttattgttgcttttatatgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058034 lncRNA downstream 139988 5545002 ~ 5553182 (-) True XLOC_028474
TCONS_00058033 lncRNA downstream 233701 5453571 ~ 5459469 (-) True XLOC_028471
TCONS_00058032 lncRNA downstream 234204 5453571 ~ 5458966 (-) False XLOC_028471
TCONS_00055268 lncRNA downstream 234211 5453571 ~ 5458959 (-) False XLOC_028471
TCONS_00055267 lncRNA downstream 237574 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00058036 lncRNA upstream 6405 5714739 ~ 5745885 (-) True XLOC_028478
TCONS_00058037 lncRNA upstream 27036 5735370 ~ 5737345 (-) True XLOC_028479
TCONS_00058038 lncRNA upstream 30676 5739010 ~ 5739938 (-) True XLOC_028480
TCONS_00055280 lncRNA upstream 101532 5809866 ~ 5825924 (-) False XLOC_028484
TCONS_00057320 lncRNA upstream 405107 6113441 ~ 6116670 (-) True XLOC_028487
TCONS_00055274 mRNA downstream 1913 5665182 ~ 5691257 (-) True XLOC_028477
TCONS_00055273 mRNA downstream 41140 5645251 ~ 5652030 (-) True XLOC_028476
TCONS_00055272 mRNA downstream 95368 5587615 ~ 5597802 (-) True XLOC_028475
TCONS_00055271 mRNA downstream 96003 5587183 ~ 5597167 (-) False XLOC_028475
TCONS_00055270 mRNA downstream 97933 5568688 ~ 5595237 (-) False XLOC_028475
TCONS_00055275 mRNA upstream 42520 5750854 ~ 5764255 (-) True XLOC_028481
TCONS_00055276 mRNA upstream 56152 5764486 ~ 5775507 (-) True XLOC_028482
TCONS_00055277 mRNA upstream 76636 5784970 ~ 5795309 (-) True XLOC_028483
TCONS_00055278 mRNA upstream 99630 5807964 ~ 5831522 (-) False XLOC_028484
TCONS_00055279 mRNA upstream 101497 5809831 ~ 5826320 (-) False XLOC_028484
TCONS_00055263 other downstream 321548 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 760646 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1122365 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1196379 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3007080 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 728430 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 857319 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1476861 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1513746 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1971645 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU130088 True 8341 lncRNA 0.37 1 CI01000020 7081414 ~ 7089754 (+)
rainbow trout (Oncorhynchus mykiss) TU130088 False 3756 lncRNA 0.41 8 NC_048566.1 11269455 ~ 11278174 (-)